Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E18
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 239 LDFKNVSIVANY 274
           LD KNVS V NY
Sbjct: 515 LDIKNVSHVINY 526


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 403 VIYCDGLGAVLRL 365
           V YCDGL +V R+
Sbjct: 114 VKYCDGLTSVYRM 126


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 432 VSFAACFGSLLSTVTDLVQS 373
           +S A C+   L   T+L+QS
Sbjct: 361 ISGATCYALFLGHATNLIQS 380


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 432 VSFAACFGSLLSTVTDLVQS 373
           +S A C+   L   T+L+QS
Sbjct: 329 ISGATCYALFLGHATNLIQS 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,298
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)