Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E17
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    24   3.1  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    24   3.1  
SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit...    23   7.1  

>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 83  KVVSYFNVFAYLSTRNHIVEKFG 15
           +VV++ N   Y+S R+HI  K G
Sbjct: 218 RVVTFANTDDYISFRHHIYAKTG 240


>SPBC215.01 ||SPBC3B9.20|GTPase activating
          protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 61 YSLTCQLEIILWKNLE 14
          YSL CQL  + + NLE
Sbjct: 38 YSLPCQLRFVHYNNLE 53


>SPBC337.14 |rpb4||DNA-directed RNA polymerase II complex subunit
          Rpb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 135

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 83 KVVSYFNVFAYLST 42
          K V+YFNVFA   T
Sbjct: 57 KTVAYFNVFARFKT 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,577
Number of Sequences: 5004
Number of extensions: 3366
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)