Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E17
         (101 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   4.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    19   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    18   9.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 72  LF*RIRLPVNSKSYCGKIWSIT 7
           LF +I   + S   CG IW++T
Sbjct: 123 LFCQIYAMLGSLFGCGSIWTMT 144


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 72  LF*RIRLPVNSKSYCGKIWSIT 7
           LF +I   + S   CG IW++T
Sbjct: 89  LFCQIYAMLGSLFGCGSIWTMT 110


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 86  VKVVSYFNVFAYL 48
           ++++ YF+ FAYL
Sbjct: 523 LRMILYFSEFAYL 535


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 30 CGKIWSIT 7
          CG IW++T
Sbjct: 13 CGSIWTMT 20


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 64  TYSLTCQLEII 32
           TY   CQL I+
Sbjct: 502 TYDTICQLNIV 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,962
Number of Sequences: 438
Number of extensions: 239
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)