Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E15
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 30 0.67
07_03_0433 - 18169930-18170029,18171183-18171307,18172192-181723... 29 0.88
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 1.2
06_01_0746 + 5580755-5582119 29 1.5
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 28 2.0
02_05_1210 - 34954006-34955412 28 2.7
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 27 3.6
05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325... 27 3.6
10_08_0035 - 14321699-14321751,14321800-14321914,14322136-143221... 27 4.7
04_04_0500 - 25677767-25680850 27 6.2
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 27 6.2
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 26 8.2
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 26 8.2
03_05_0375 + 23594977-23595045,23595471-23595926 26 8.2
02_01_0468 + 3357043-3357226,3357695-3358155 26 8.2
01_06_1471 - 37588330-37588599 26 8.2
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 26 8.2
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 29.9 bits (64), Expect = 0.67
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = +2
Query: 53 TAARAPALKP*PERIGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 223
T RAP+L P R G ++PP L + LPA P APT PVG G
Sbjct: 51 TRPRAPSLVRVPRRGGEAVVPP--LESPGFRSVQPVSVSLPASPSGFGAPT-PVGGG 104
>07_03_0433 -
18169930-18170029,18171183-18171307,18172192-18172358,
18173027-18173081,18173409-18173491,18173493-18173622,
18174482-18174691
Length = 289
Score = 29.5 bits (63), Expect = 0.88
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = +2
Query: 50 TTAARAPALKP*PERIGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNH 229
+ AA + L R+GT PPC + A AA R GP A A T G
Sbjct: 12 SAAAESRLLSRAFSRVGTPAPQPPCRGFSKASAAAAASSR---GPAAAAATTTATAAGAR 68
Query: 230 PE 235
PE
Sbjct: 69 PE 70
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.1 bits (62), Expect = 1.2
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Frame = +2
Query: 65 APALKP*PERIGTQLIPPPCLRRATHVKARAAEERLP-------AGPIAPVA--PTVPVG 217
AP +P P+ IPPP +AT RA E + P AGP AP + P++ +G
Sbjct: 40 APPPEPSPQPHHATPIPPPSPGQATEGWPRAEEPQPPIGGTPGAAGPPAPPSFFPSLELG 99
Query: 218 MGNHPEASHAA 250
P A AA
Sbjct: 100 TSAAPPALEAA 110
>06_01_0746 + 5580755-5582119
Length = 454
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 98 GTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 223
G L P +RR H +ARA L A APV V G+G
Sbjct: 40 GRGLAMPEIVRRMAH-RARARRRLLSAAEAAPVRARVRAGLG 80
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 68 PALKP*PERIGTQLIPPPCLRRAT---HVKARAAEERLPAGPIAPVAPTVPV 214
PAL P P + ++PPP L AT + A E P I P+ P+ PV
Sbjct: 344 PALSPSPPPLHGSVMPPP-LPPATVEPVISAPMVEPPPPPAMITPLPPSTPV 394
>02_05_1210 - 34954006-34955412
Length = 468
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = +2
Query: 35 SRCLRTTAARAPALKP*PERIGTQLIPPPCLRRATHVKARAAEERLPA 178
S L T AA+ P KP P+R IPP L T A AA LPA
Sbjct: 11 SLVLATGAAQGPKRKPPPKRFVHTPIPPSILSDPT--LAAAATGLLPA 56
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +2
Query: 116 PPCLRRATHVKARAAEERLPAGP----IAPVAPTVPVGMGNHPEASH 244
PPC R + A RLP A + P P G HP ASH
Sbjct: 40 PPCTRLLLPEQPWGAAARLPLSEPSWGTAALPPEPPWGAAAHPPASH 86
>05_01_0413 -
3253345-3253461,3253595-3253666,3253763-3253876,
3254050-3254163,3254420-3254520,3254616-3254694,
3254789-3254863,3254955-3255017,3255281-3255361,
3255449-3255574,3255898-3256022,3256722-3256839,
3257420-3257554,3258029-3258175,3259016-3259321
Length = 590
Score = 27.5 bits (58), Expect = 3.6
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 125 LRRATHVKARAAEERLPAGPIAPVAPTVPVG--MGNHPEASHAAKEALKSRI 274
+RRA V ARAA E AG V +G +G H A HA +E LK+ I
Sbjct: 58 VRRAA-VAARAAAENGVAGSGGFDYDLVIIGAGVGGHGAALHAVEEGLKTAI 108
>10_08_0035 -
14321699-14321751,14321800-14321914,14322136-14322199,
14322221-14322238,14323433-14323524,14323580-14323601,
14324345-14324424,14324882-14325082
Length = 214
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 147 RHVRRRNGCLRGQLHLWPQLCLWGWETIRRQAMLPRRR*K 266
R RRR+ + GQL L P L+ + R ++P RR K
Sbjct: 11 RRRRRRSAAIGGQLLLPPLFWLFPLSPLSRPMVMPARRGK 50
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 146 KARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAA 250
K RA + P P +AP +G+HP+AS A
Sbjct: 12 KPRANQPPPPPPPPFRLAPAAVAALGSHPDASSYA 46
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 50 TTAARAPALKP*PERIGTQLIPPPCL---RRATHVKARAAEERLPAGPIAPVAPTVP 211
TTAA AP P P Q PPP R+ T + + + LPA +PT P
Sbjct: 477 TTAAPAPPSPPEPPSPRHQPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQASPTSP 533
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = -2
Query: 217 PHRHSWGHRCNWPRRQPFLRRT-CL 146
PH H W R WP LRR CL
Sbjct: 74 PHLHRWYSRLRWPLLAGRLRRVGCL 98
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 107 LIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEA 238
L PPP L H+ R A E+ P VA P + H E+
Sbjct: 172 LPPPPPLPPQDHIPERLAVEKSPMDVEPAVASESPEQLQEHAES 215
>03_05_0375 + 23594977-23595045,23595471-23595926
Length = 174
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 217 PHRHSWGHRC-NWPRRQPFLRRTCLYMSRTAQAWRRN 110
P HSW NWPR +PF R + + A W N
Sbjct: 11 PSSHSWHVGFWNWPRCRPFHRSSVVDGCGVAGPWDDN 47
>02_01_0468 + 3357043-3357226,3357695-3358155
Length = 214
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 173 PAGPIAPVAPTVPVGMGNHPEASHAAKEALKS 268
PAG P AP P G + P AA KS
Sbjct: 157 PAGQAPPGAPATPAGTNSSPANGGAAGGGAKS 188
>01_06_1471 - 37588330-37588599
Length = 89
Score = 26.2 bits (55), Expect = 8.2
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 107 LIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAA 250
L P PC+R H + GP AP P+ P G G+ A A+
Sbjct: 14 LPPSPCIR---HQRRGGMGAAATTGPAAPPLPSFPGGDGSARAADLAS 58
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 110 IPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPV 214
+PP R +AR+A LP+ P APV+ P+
Sbjct: 14 LPPRAGLRLPLPRARSARVSLPSSPAAPVSLQSPL 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,664,270
Number of Sequences: 37544
Number of extensions: 174965
Number of successful extensions: 690
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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