Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E14
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   3.5  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   4.7  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   6.2  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   6.2  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   8.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.2  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 117 VLGIVKDCVDDDVYMCLKEKVL 182
           V+  VK+ +DDD+Y  LKEK+L
Sbjct: 107 VVNCVKE-IDDDLYNTLKEKLL 127


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 359 SKKSAAESTNLDSTCASLAFGSSDSGSKARA 267
           +K + ++ +NL++  A L FG   + S ARA
Sbjct: 329 AKSTKSDDSNLNANFARLGFGQFAAASNARA 359


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -1

Query: 235 TPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTL-----PPIPRSVDS 86
           +PS    S      S+ F+ FS R     SST +L +   L     PP PR+  S
Sbjct: 584 SPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
 Frame = -3

Query: 431 RPSSRDLLIRSTADDGILN*IT*FSKKSA--AESTNLDSTCASLAFGSSDSGSKARADTW 258
           +PSSRDL    T D+  L+ +   +  +   A     ++   S    S+DS   A     
Sbjct: 311 QPSSRDLQNHPTVDESRLSSVAPPASNTLNHANGNQAENASESSTSQSNDSQGPANTSYP 370

Query: 257 RTFALQGDTINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQ 120
            +  L  D  N   L   P    +     + A + V+     N+AQ
Sbjct: 371 VSVPLPNDAENNHTLSRNPYIPSLNFKDNMSAELSVVATLASNSAQ 416


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 295 HRTAAPKHVRTLGEPLLSKVTPSIKVISLFDLKVSAYFKTF 173
           H+  A   VRT G PLL K   +IK     +LK   + + F
Sbjct: 25  HQERALIEVRTRGRPLLCKKCRAIKQQLKSNLKCVCHLQPF 65


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 121  WALLRTVSTMTCICASRRRF 180
            W L +TV +M CI A +R F
Sbjct: 1702 WCLAKTVLSMLCIIAIQRFF 1721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,208
Number of Sequences: 5004
Number of extensions: 37152
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)