Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E14
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0710 - 20873420-20874745 29 2.0
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 28 3.5
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 28 3.5
04_01_0615 - 8060085-8060972 28 3.5
02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630... 28 3.5
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 28 4.7
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 27 6.2
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 27 6.2
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 27 8.2
>07_03_0710 - 20873420-20874745
Length = 441
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 338 STNLDSTCASLAFGSSDSGSKARADTWRTFALQGDTINQSYLPLRP 201
S L S + F S SG R ++ +L+G T+ + LP+ P
Sbjct: 259 SARLSSAAKTTPFVPSPSGGARRRSSYYYLSLEGITVGDTLLPIDP 304
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = -1
Query: 280 PKHVRTL----GEPLLSKVTPSIKVISLFD-LKVSAYFKTFSLRHIYTSSSTQS--LTMP 122
P H TL G+ L ++ P + V+ L D ++ Y + R Y+SSS+ S P
Sbjct: 2 PPHEDTLDAGGGDVLTFRLHP-LAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAP 60
Query: 121 KTLPPIPRSVDSCSVGI 71
+ PP P + C +G+
Sbjct: 61 EDPPPPPTRMSGCVIGV 77
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.3 bits (60), Expect = 3.5
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -1
Query: 286 AAPKHVRTLGEPLLSKVTPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMP-KTLP 110
AAP + L P + + TP I S + V AY++T H+ + S T P ++P
Sbjct: 772 AAPTYSLVL-RPYIEEPTPIILPSSHINESVDAYWETLEYCHLTAGFAKPSSTFPGYSVP 830
Query: 109 PI--PRSVDSCSV 77
+ PRS S V
Sbjct: 831 EVSHPRSWSSLRV 843
>04_01_0615 - 8060085-8060972
Length = 295
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 75 ASRAPPRLKVGQPRKPSYRSIQPSC 1
+S APP +G PRKP +R+ +C
Sbjct: 191 SSAAPPAWDLGGPRKPHFRAAIAAC 215
>02_05_1121 +
34262019-34262040,34262144-34262211,34262909-34263067,
34263146-34263313,34264125-34264278,34264845-34264924,
34265567-34265839,34265956-34266099,34266750-34266884,
34266994-34267092,34267530-34267586,34267673-34267877,
34268159-34268277,34268779-34268877,34268964-34269203
Length = 673
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 249 KGSPSVRTCFGAAVR*AESERGTGGVKISRFSCRLLRELCYSVQNAIICCRTNQK 413
KG +T F + ER + ++ F CR+LR CY+V + + RT+++
Sbjct: 88 KGHTLAQTVF-TCIYLMRMERTSSHAILNSF-CRILRATCYAVVSVVSTARTHEE 140
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 362 FSKKSAAESTNLDSTCASLAFGSSDSG----SKARADTWRTFALQGD 234
+ KK + T DS AS G+S + ++AR WR FA GD
Sbjct: 328 YGKKWVRKRTVTDSPTASTRGGTSSARGRCTTRARCSRWRVFADDGD 374
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 225 IDGVTLESK--GSPSVRTCFGAAVR*AESERGTGGVKISRFSCRLLRELCYSVQNAIICC 398
++G TL++ G P+ + G A RG G SR R LR C+ ++++
Sbjct: 1034 LNGPTLQNSYAGDPTQQASGGVAFASNSGGRGNDGGGNSRGIGRRLRSCCFGSSDSLVAS 1093
Query: 399 RTNQK 413
T K
Sbjct: 1094 ATRLK 1098
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 301 KAREAQVESRLVDSAADFLENYVIQFKMPSSAVERIRRSLE 423
K RE+ ++ RL+ DF E Y Q K ++++ ++
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 154 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 71
+S+ST S T+ + PP PRS+ SC I
Sbjct: 6 SSTSTPSSTIERLRPPYPRSI-SCHASI 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,378,012
Number of Sequences: 37544
Number of extensions: 280331
Number of successful extensions: 911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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