Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E14
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    29   2.4  
U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor...    29   2.4  
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anch...    29   2.4  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical pr...    28   4.2  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   5.6  
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    27   7.4  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform b protein.
          Length = 1284

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 202  LKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRS 95
            LKV   F+++S R  + S  T SLT  KT+  IP+S
Sbjct: 965  LKVFTDFRSWSYRMRHISGCTVSLTNDKTVIRIPKS 1000


>U23517-6|AAB93340.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein1, isoform a protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 202  LKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRS 95
            LKV   F+++S R  + S  T SLT  KT+  IP+S
Sbjct: 961  LKVFTDFRSWSYRMRHISGCTVSLTNDKTVIRIPKS 996


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 25/116 (21%), Positives = 46/116 (39%)
 Frame = -3

Query: 395 ADDGILN*IT*FSKKSAAESTNLDSTCASLAFGSSDSGSKARADTWRTFALQGDTINQSY 216
           AD G+   I  F K S  + T++       +   S +G         T     + I   Y
Sbjct: 554 ADKGVCL-IDEFDKMSDQDRTSIHEAMEQQSISISKAGIVTSLHARCTVIAASNPIGGRY 612

Query: 215 LPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD*K 48
            P R  +  +     + +   V+   V+ ++ ++  D ++ +F+ G HR H  D K
Sbjct: 613 NPTRTFAENVDLTEPILSRFDVLC--VIRDSVDSVEDERLAKFVVGNHRTHHPDAK 666


>AF045926-1|AAC24507.1| 1280|Caenorhabditis elegans A kinase anchor
            protein protein.
          Length = 1280

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 202  LKVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRS 95
            LKV   F+++S R  + S  T SLT  KT+  IP+S
Sbjct: 961  LKVFTDFRSWSYRMRHISGCTVSLTNDKTVIRIPKS 996


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 203  PQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD 54
            P+ +    N     ++ V++D V  N+     +SK   FL   HR HR D
Sbjct: 3292 PEQVISLCNWASSKNLRVVIDEVFANSVFDKLNSKFRPFLSYRHRLHRPD 3341


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 203  PQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD 54
            P+ +    N     ++ V++D V  N+     +SK   FL   HR HR D
Sbjct: 3292 PEQVISLCNWASSKNLRVVIDEVFANSVFDKLNSKFRPFLSYRHRLHRPD 3341


>Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical
           protein F22E12.3 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 324 VKISRFSCRLLRELCYSVQNA-IICCRTNQKVP 419
           V++ R SC    +  YS++NA  +C  TN+ +P
Sbjct: 215 VRVCRHSCGYCNDELYSMKNAPALCSDTNRMIP 247


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 316 QVESRLVDSAADFLENYVIQFKMPSSAVERIRRSLEEGR 432
           Q++ +    AAD++ NY+I+F        ++ R L  GR
Sbjct: 772 QIQGKCGQDAADWVSNYIIRFANAIDVRCKVGRQLPVGR 810


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 238 PWRAKVRQVSARALEPLSDEPKAREAQVES 327
           P+ AK+R V+    +P+S+  K R + +ES
Sbjct: 354 PFEAKIRAVAGYTRKPISEVQKMRPSDLES 383


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 238 PWRAKVRQVSARALEPLSDEPKAREAQVES 327
           P+ AK+R V+    +P+S+  K R + +ES
Sbjct: 544 PFEAKIRAVAGYTRKPISEVQKMRPSDLES 573


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  DAHRTGIYRSWNRWQRF 121
           DAHRTG+ R WN  + F
Sbjct: 520 DAHRTGVSRWWNSIKAF 536


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 8   GWIERYEGLRGC 43
           GW +RY GLRGC
Sbjct: 72  GWYDRYCGLRGC 83


>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 8   GWIERYEGLRGC 43
           GW +RY GLRGC
Sbjct: 72  GWYDRYCGLRGC 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,858,336
Number of Sequences: 27780
Number of extensions: 219479
Number of successful extensions: 769
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)