Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E14
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 192 ETLRSKREITLIDGVTLESKGSPSVR 269
           + +R+ R+ + +DGVTL +  S S++
Sbjct: 145 QLIRNLRQSSALDGVTLLADNSVSIK 170


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 310 EAQVESRLVDSAADFLENYVIQFKMPSSAVERIR 411
           E + +  ++  A DFLE Y    +  +S   RIR
Sbjct: 58  EPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIR 91


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 341 ESTNLDSTCASLAFGSSDSGSKARA 267
           +S N   TC   A  S+  GS++R+
Sbjct: 199 KSENETKTCKKYAISSNSLGSRSRS 223


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 260 KCPHVLWSRCPMSRKRERHRWSQD 331
           K  + L   CP+ + +ER  W  D
Sbjct: 94  KISNELNEMCPLEKLKERRIWRDD 117


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 121 WALLRTVSTMTCI 159
           WAL + +S M CI
Sbjct: 328 WALFKAMSHMLCI 340


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 121 WALLRTVSTMTCI 159
           WAL + +S M CI
Sbjct: 296 WALFKAMSHMLCI 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,137
Number of Sequences: 438
Number of extensions: 2672
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)