Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E13
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   2.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   2.2  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    23   9.1  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 74  TPGFFFYYFNSIHYGSFICLYSPR 3
           +P  +FY+F +I  G+FI L++PR
Sbjct: 190 SPFLWFYFFITI-VGNFIPLFTPR 212


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 68  GFFFYYFNSIHYGS 27
           G+  YYF+S+H+G+
Sbjct: 699 GYVVYYFSSLHFGA 712


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 284 HIIIYLKKNSYIYQKHE 234
           H I+ +  ++YIY KHE
Sbjct: 44  HPIVSIGSSTYIYTKHE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,249
Number of Sequences: 5004
Number of extensions: 17205
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)