Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E13
         (292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical pr...    25   9.1  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical
           protein F34D10.3 protein.
          Length = 147

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 62  FFYYFNSIHYGSFICL 15
           F Y FN+++ G F+C+
Sbjct: 78  FLYPFNNVYTGQFVCI 93


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 133 IGLRLYYFMYF*IVRYF*KVLVGG*IWEWSNSHISCF**IYEFFLR 270
           + + LYY      +R    V  G  +  W    I+CF  I+E FLR
Sbjct: 131 VWISLYYHTQGGFLRSLATVYGGERLQSWPIVFITCFIVIFELFLR 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,530,952
Number of Sequences: 27780
Number of extensions: 91744
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)