Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E12
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 70 1e-13
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 70 1e-13
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 27 1.4
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 2.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 4.2
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 4.2
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 5.6
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 5.6
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 9.7
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 70.1 bits (164), Expect = 1e-13
Identities = 47/122 (38%), Positives = 61/122 (50%)
Frame = +2
Query: 35 KQATVFLNRKGGMKRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRGRIRDS 214
KQ +F N K G R R K+VGL F+ P EA+ G Y+DKKCPF G VSIRGRI
Sbjct: 15 KQPHIFQNAKKGAGR---RWYKDVGLGFKT-PAEAIYGEYVDKKCPFVGQVSIRGRILTG 70
Query: 215 ALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTIGDCRP 394
+ KM RT + + Y L + + + G++VT+G CRP
Sbjct: 71 TV-VSTKMHRTIIIRREYLHFIPKYNRY--EKRHKNLAAHVSPAFRINEGDVVTVGQCRP 127
Query: 395 LS 400
LS
Sbjct: 128 LS 129
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 70.1 bits (164), Expect = 1e-13
Identities = 47/122 (38%), Positives = 61/122 (50%)
Frame = +2
Query: 35 KQATVFLNRKGGMKRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRGRIRDS 214
KQ +F N K G R R K+VGL F+ P EA+ G Y+DKKCPF G VSIRGRI
Sbjct: 15 KQPHIFQNAKKGAGR---RWYKDVGLGFKT-PAEAIYGEYVDKKCPFVGQVSIRGRILTG 70
Query: 215 ALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTIGDCRP 394
+ KM RT + + Y L + + + G++VT+G CRP
Sbjct: 71 TV-VSTKMHRTIIIRREYLHFIPKYNRY--EKRHKNLAAHVSPAFRINEGDVVTVGQCRP 127
Query: 395 LS 400
LS
Sbjct: 128 LS 129
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 1.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = -2
Query: 240 CIFIFVNNALSRI-RPRMDTL-----PVNGHFLSMYVPSTASQGCR*NRRPTFLECLISF 79
C +F+ + LSRI R + GHF S+ VPS + Q R T + L+ F
Sbjct: 105 CCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMATTIASLLDF 164
Query: 78 LFMPPL 61
PL
Sbjct: 165 SLSDPL 170
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 115 P*TNILRMSHILPFHAPLAIEEH 47
P TN+L+M LP H I EH
Sbjct: 14 PGTNVLKMKKPLPLHMRTKIREH 36
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 248 SCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIV 373
S ++A II+ + ++ Y+ S S L L ED+E+G V
Sbjct: 452 STHEARIINYSYVDNLYILSFQQSVLNQQFLRIEDIEVGQFV 493
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 273 PLPA*IQHI*QATQDHVCSSIALLQRTWKSETSSQLAIA 389
PL I + T+D + +LQ W+S TS L +A
Sbjct: 631 PLGCNILRVDAQTKDGALMDMLILQPIWRSPTSCNLMLA 669
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.0 bits (52), Expect = 5.6
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 134 EAVEGTYIDKKCPFTGNVSIRGRIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDT 313
E +EG + P G ++ R+ S +F+K M R + A+ S + N + S
Sbjct: 84 EGIEGHFRRVGIPCFGPSALAARMEGSKVFSKDFMHRNNIPTAVYKSFS--NYDHAKSFL 141
Query: 314 GSCLFIYRLASEDVEIGNIVTI 379
+C F + ++ + G V I
Sbjct: 142 DTCTFDVVIKADGLAAGKGVII 163
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 222 NNALSRIRPRMDTLPVNGHFLSMYVP 145
+++L+R+ +M+ PVN S+YVP
Sbjct: 91 SDSLARLTAQMNHCPVNVKLYSVYVP 116
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 24.2 bits (50), Expect = 9.7
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 397 KRPAIANCDDVSDFHVL*SKAIDEQT*SCVACQICCI*AGNGDNQRLITTCSLHFH 230
K+P +A+ +DV L + D S +C IC NGD R + C FH
Sbjct: 736 KKP-VASHEDVKRSGGLFAYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFH 790
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,720
Number of Sequences: 5004
Number of extensions: 42522
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -