Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E12
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 66 1e-11
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 64 5e-11
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 64 7e-11
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 64 7e-11
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 64 7e-11
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 64 7e-11
03_05_0671 + 26608953-26609671,26609775-26610495 28 3.1
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 28 4.2
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 27 5.5
06_02_0163 - 12488622-12488717,12488744-12488844,12490765-12490924 27 5.5
03_06_0231 + 32522898-32523524 27 5.5
09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462... 27 7.3
02_04_0311 + 21936812-21937861 27 7.3
04_04_0057 + 22410167-22411330 27 9.6
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 66.5 bits (155), Expect = 1e-11
Identities = 50/126 (39%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Frame = +2
Query: 35 KQATVFLNRKGGMKRKD----MRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRGR 202
+Q F +K G +K R KN+GL F+ P EA+EGTYIDKKCPFTG VSIRGR
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKT-PREAIEGTYIDKKCPFTGTVSIRGR 61
Query: 203 IRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTIG 382
I + KM RT + + Y S + + V+ G+ V IG
Sbjct: 62 IIAGTCHS-AKMNRTIIVRRNYLHFVKKYQRY--EKRHSNIPAHISPCFRVKEGDHVIIG 118
Query: 383 DCRPLS 400
CRPLS
Sbjct: 119 QCRPLS 124
Score = 41.1 bits (92), Expect = 4e-04
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
+YLH++ KY ++KRH + H+SPCFR
Sbjct: 81 NYLHFVKKYQRYEKRHSNIPAHISPCFR 108
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 64.1 bits (149), Expect = 5e-11
Identities = 53/132 (40%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Frame = +2
Query: 35 KQATVFLNRKGGMKRKDM-----RHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
KQ VFL K K K R KN+GL F+ P EA+EGTYIDKKCPFTG VSIRG
Sbjct: 11 KQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKT-PREAIEGTYIDKKCPFTGTVSIRG 69
Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTG-----SCLFIYRLASEDVEIG 364
RI + KM RT + + + G S + + V+ G
Sbjct: 70 RIIAGTCHS-AKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFRVKEG 128
Query: 365 NIVTIGDCRPLS 400
+ V IG CRPLS
Sbjct: 129 DHVIIGQCRPLS 140
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 7/35 (20%)
Frame = +1
Query: 265 DYLHYLPKY----NI---FDKRHRIMSVHLSPCFR 348
+YLH++ KY N+ ++KRH + H+SPCFR
Sbjct: 90 NYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR 124
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 63.7 bits (148), Expect = 7e-11
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = +2
Query: 35 KQATVFLN-RKGGMKRKD----MRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
KQ VFL+ +K G +K R K++GL F+ P EA+EGTYIDKKCPFTG VSIRG
Sbjct: 11 KQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKT-PREAIEGTYIDKKCPFTGTVSIRG 69
Query: 200 RIRDSALFTKMKMQRT 247
RI + KM RT
Sbjct: 70 RIIAGTCHS-AKMNRT 84
Score = 30.7 bits (66), Expect = 0.59
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 9/37 (24%)
Frame = +1
Query: 265 DYLHYLPKY-----NI----FDKRHRIMSVHLSPCFR 348
+YLH++ KY N+ ++KRH + H+SPCFR
Sbjct: 90 NYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR 126
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 63.7 bits (148), Expect = 7e-11
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = +2
Query: 35 KQATVFLN-RKGGMKRKD----MRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
KQ VFL+ +K G +K R K++GL F+ P EA+EGTYIDKKCPFTG VSIRG
Sbjct: 11 KQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKT-PREAIEGTYIDKKCPFTGTVSIRG 69
Query: 200 RIRDSALFTKMKMQRT 247
RI + KM RT
Sbjct: 70 RIIAGTCHS-AKMNRT 84
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 63.7 bits (148), Expect = 7e-11
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = +2
Query: 35 KQATVFLN-RKGGMKRKD----MRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
KQ VFL+ +K G +K R K++GL F+ P EA+EGTYIDKKCPFTG VSIRG
Sbjct: 11 KQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKT-PREAIEGTYIDKKCPFTGTVSIRG 69
Query: 200 RIRDSALFTKMKMQRT 247
RI + KM RT
Sbjct: 70 RIIAGTCHS-AKMNRT 84
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 298 FDKRHRIMSVHLSPCFR 348
++KRH + H+SPCFR
Sbjct: 125 YEKRHSNIPAHVSPCFR 141
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 63.7 bits (148), Expect = 7e-11
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Frame = +2
Query: 35 KQATVFLN-RKGGMKRKD----MRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
KQ VFL+ +K G +K R K++GL F+ P EA+EGTYIDKKCPFTG VSIRG
Sbjct: 11 KQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKT-PREAIEGTYIDKKCPFTGTVSIRG 69
Query: 200 RIRDSALFTKMKMQRT 247
RI + KM RT
Sbjct: 70 RIIAGTCHS-AKMNRT 84
Score = 30.7 bits (66), Expect = 0.59
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 9/37 (24%)
Frame = +1
Query: 265 DYLHYLPKY-----NI----FDKRHRIMSVHLSPCFR 348
+YLH++ KY N+ ++KRH + H+SPCFR
Sbjct: 90 NYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR 126
>03_05_0671 + 26608953-26609671,26609775-26610495
Length = 479
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 50 FLNRKGGMKRKDMRHSKNVGLRFQRH 127
FLN G K +++H KN+ +RH
Sbjct: 289 FLNESCGQKMWELKHDKNISFLLKRH 314
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 12 DQTEKAFTNRRRCS-SIARGA*KGRI*DILRMLVYGFNDTPVRPLKAH 152
D+ EK N C ++ + A GR+ +LR+L+ G +DT + + AH
Sbjct: 237 DRAEKTLENLESCEKNVRQMAENGRLQPLLRLLLEGSSDTQL-SMAAH 283
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 330 SIALLQRTWKSETSSQLAIAGRFPMTVRFNVLNVSK 437
S +L+ K+ ++ Q IAG+ P TVR +VL+ S+
Sbjct: 412 SPGILKEVPKALSAIQKYIAGKVPSTVRLSVLDASE 447
>06_02_0163 - 12488622-12488717,12488744-12488844,12490765-12490924
Length = 118
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 232 ENAANKLLSGADYLHYLPKYNIFDKRHRIMS 324
EN+ NK G+ Y H +P + + D H+ +S
Sbjct: 11 ENSPNKCNRGSIYQHAIPPWFLTDPHHQCLS 41
>03_06_0231 + 32522898-32523524
Length = 208
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 316 SCVACQICCI*AGNGDNQRLITTCSLHFH 230
+C C IC G+GD R++ C FH
Sbjct: 138 TCSCCSICLDNYGDGDVLRMLPECGHLFH 166
>09_06_0302 -
22144271-22144543,22144946-22145083,22146004-22146278,
22146486-22146957
Length = 385
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 275 ITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTIGDCRPLSNDSQVQCT 424
+TC+NT ++ GSC + + +A+ VE N++ G+ LS + C+
Sbjct: 155 LTCVNTIKMSMYEGSC-WAFSVAAA-VESINMIRTGNLLTLSEQQILDCS 202
>02_04_0311 + 21936812-21937861
Length = 349
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 304 CQICCI*AGNGDNQRLITTCSLHFHFREQRTVTDTASDGHVT 179
C +C +GD+ RL+ CS FH D +GHVT
Sbjct: 123 CAVCLTVFDDGDDLRLLPQCSHAFH----PDCIDPWLEGHVT 160
>04_04_0057 + 22410167-22411330
Length = 387
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 316 SCVACQICCI*AGNGDNQRLITTCSLHFH 230
S + C +C +GD+ RL+ CS FH
Sbjct: 129 SVLECAVCLTSFDDGDDLRLLPHCSHAFH 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,871,285
Number of Sequences: 37544
Number of extensions: 300396
Number of successful extensions: 749
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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