Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E12
         (460 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...    99   6e-21
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.        99   6e-21
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...    99   6e-21
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...    99   6e-21
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...    99   6e-21
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.        99   6e-21
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...    99   6e-21
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...    99   6e-21
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...    99   6e-21
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...    56   8e-08

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score = 99.1 bits (236), Expect = 6e-21
 Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 5/127 (3%)
 Frame = +2

Query: 35  KQATVFLNRKGGM-----KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRG 199
           KQ T+F N+K  +     K K  R+ KN+GL F+  P EA+EGTYIDKKCPFTGNVSIRG
Sbjct: 12  KQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKT-PKEAIEGTYIDKKCPFTGNVSIRG 70

Query: 200 RIRDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTI 379
           RI  S + TKMKMQRT   +   +        +        + +      DV+IG+IVT+
Sbjct: 71  RIL-SGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL-SPCFRDVQIGDIVTV 128

Query: 380 GDCRPLS 400
           G+CRPLS
Sbjct: 129 GECRPLS 135



 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 91  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 118


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score = 55.6 bits (128), Expect = 8e-08
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KYN F+KRH+ MSVHLSPCFR
Sbjct: 16  DYLHYIRKYNRFEKRHKNMSVHLSPCFR 43



 Score = 35.1 bits (77), Expect = 0.12
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 224 TKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTIGDCRPLS 400
           TKMKMQRT   +   +        +        + +      DV+IG+IVT+G+CRPLS
Sbjct: 3   TKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSP-CFRDVQIGDIVTVGECRPLS 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,848,069
Number of Sequences: 237096
Number of extensions: 1537655
Number of successful extensions: 3001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2991
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)