Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E12
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...    74   6e-14
AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    29   2.1  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    29   2.1  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    29   2.1  
Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 51/125 (40%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
 Frame = +2

Query: 35  KQATVFLNRKGGM---KRKDMRHSKNVGLRFQRHPCEAVEGTYIDKKCPFTGNVSIRGRI 205
           KQ TV LN K  +    +K  R+ + VGL F+  P +AVEGTYIDKKCP+ GNV IRG I
Sbjct: 11  KQPTVNLNNKARILAGSKKTPRYIREVGLGFKA-PRDAVEGTYIDKKCPWAGNVPIRGMI 69

Query: 206 RDSALFTKMKMQRTSCYQALIISITCLNTTYLTSDTGSCLFIYRLASEDVEIGNIVTIGD 385
             + +  K KM RT   +   +        Y              A  D+  G++VTIG+
Sbjct: 70  L-TGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHC-SPAFRDIHPGDLVTIGE 127

Query: 386 CRPLS 400
           CRPLS
Sbjct: 128 CRPLS 132



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 265 DYLHYLPKYNIFDKRHRIMSVHLSPCFR 348
           DYLHY+ KY  ++KRH+ +  H SP FR
Sbjct: 88  DYLHYIKKYRRYEKRHKNVPAHCSPAFR 115


>AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical
           protein C07G3.8 protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 293 TYLTSDTGSCLFIYRLASEDVEIGNIVTIGDCRPLSNDSQVQ 418
           ++LT D  SC+  +  A+E     NI  +G+   LSND Q+Q
Sbjct: 23  SFLTEDVNSCIEWFYTAAET---RNISCLGEYDFLSNDKQIQ 61



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 296 YLTSDTGSCLFIYRLASEDVEIGNIVTIGDCRPLSNDSQVQ 418
           YL  +  SC+  +  A+E     NI  +G+   LSND Q+Q
Sbjct: 274 YLNQNVISCIQWFYTAAEARRTRNISCLGEYDFLSNDKQIQ 314


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 191 WTRYP*MDISYQCMCLQRPHRGVVETVDQHS*NVSYPSFSCPPCD*GTPSPVC 33
           W R   +DI    MC+QRPHR  V          + PS    P   G   P+C
Sbjct: 338 WVRKVFLDILPLLMCMQRPHRKNVIQRSHRRLLETGPSVEENPMRSGEHHPLC 390


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 191 WTRYP*MDISYQCMCLQRPHRGVVETVDQHS*NVSYPSFSCPPCD*GTPSPVC 33
           W R   +DI    MC+QRPHR  V          + PS    P   G   P+C
Sbjct: 338 WVRKVFLDILPLLMCMQRPHRKNVIQRSHRRLLETGPSVEENPMRSGEHHPLC 390


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 191 WTRYP*MDISYQCMCLQRPHRGVVETVDQHS*NVSYPSFSCPPCD*GTPSPVC 33
           W R   +DI    MC+QRPHR  V          + PS    P   G   P+C
Sbjct: 338 WVRKVFLDILPLLMCMQRPHRKNVIQRSHRRLLETGPSVEENPMRSGEHHPLC 390


>Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical
           protein B0198.2 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 196 RPYP*QCVVHENENAA-NKLLSGADYLHYLPKY 291
           RP P QC+++   NA+ NKL +  D  + LP++
Sbjct: 143 RPSPEQCLIYSQYNASLNKLPNHDDRYYALPRH 175


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
          protein C16A3.3 protein.
          Length = 1743

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 8  GGSDR-ESVHKQATVFLNRKGGMKRK 82
          GGSD+ + ++K  + F+  KGG+KRK
Sbjct: 17 GGSDKPKPLNKSNSDFVGTKGGLKRK 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,070
Number of Sequences: 27780
Number of extensions: 255609
Number of successful extensions: 562
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)