Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E12
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   4.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   6.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 322 SVHLSPCFRGRGNRKHRHNWRLQAAF 399
           S  +S  FRG  N K   NW  Q  F
Sbjct: 270 SYEISNAFRGNNNLKWLVNWGEQWGF 295


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 284 LNTT-YLTSDTGSCLFIYR 337
           +NTT Y+  D G  L IY+
Sbjct: 200 MNTTVYIADDRGDALIIYQ 218


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 280 LPKYNIFDKRHRIMSVHLS 336
           LP++ +   R R  ++HLS
Sbjct: 185 LPQFRVLGHRQRHSTIHLS 203


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 229 NENAANKLLSGADYL 273
           N+N  N L+S  DY+
Sbjct: 33  NDNIRNTLISNGDYI 47


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 256 ITTCSLHFHFREQRT 212
           IT C L+ HFR   T
Sbjct: 329 ITVCVLNVHFRSPST 343


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 223 HENENAANKLLSGADYLHYLP 285
           H N+N  +K+  G D   Y P
Sbjct: 177 HINQNMGDKVEIGIDLREYYP 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,385
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)