Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E11
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    30   0.24 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   2.2  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   2.9  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   6.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.7  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 229 RSSILINNIEASVCNVKRIFFTKQM*MYMRYLYQKYNIYFFCLSVCL 89
           R ++  ++ + + C+ K +FF K + +   YLY  Y  +  C ++ L
Sbjct: 11  RFAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWIVCTTISL 57


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 375 SQEGSTPQISRAYCAIVRSDENLPDDAMF 289
           ++  ST +++R  C IV SD+   D  ++
Sbjct: 40  NETSSTGEVTRCVCGIVESDDEASDGGLY 68


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 34  STKKVPSKSVQPFRRLPVTNRQTDKKNKYCIFGIGNAYTFTSA 162
           S     ++S  P + +P+  RQT  +  Y  FGI  +Y  T A
Sbjct: 244 SVSMTAAESKNPKKAIPLAVRQTFWRILYVYFGISISYGITVA 286


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 165 VKKILLTLQTDASILFISIDDLNNC---INCNTRIK 263
           VKK  L +  D S LF+SI++  N    I+CN   K
Sbjct: 53  VKKTDLRITNDYSSLFVSIENKKNTIPDIHCNNLSK 88


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 183 SKEFFLLSRCECICVT 136
           S  +F L  CEC+CV+
Sbjct: 221 SSNYFGLENCECLCVS 236


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 34  STKKVPSKSVQPFRRLPVTNRQTDKKN 114
           + ++VP K++ P+ +  +  RQTD +N
Sbjct: 282 AAQRVPRKTISPWSQCLLVARQTDVEN 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,291
Number of Sequences: 5004
Number of extensions: 42127
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)