Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E11
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650...    59   2e-09
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...    50   8e-07
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739...    29   2.9  

>01_06_1361 -
           36663859-36663985,36664353-36664543,36664746-36665009,
           36665215-36665373,36665476-36665679,36665765-36665983,
           36666191-36666322,36666406-36666523,36666670-36666854,
           36667263-36667355,36667819-36668008,36668500-36668585,
           36668671-36668847,36669141-36669320,36669423-36669623
          Length = 841

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 30/38 (78%)
 Frame = +2

Query: 257 DQGKWAEMVIENIASSGKFSSDRTIAQYAREIWGVEPS 370
           D+ KW +M I N A SGKFSSDRTIAQYA+EIWG+  S
Sbjct: 801 DKKKWIKMSILNTAGSGKFSSDRTIAQYAKEIWGITAS 838


>03_06_0026 - 31118997-31119113,31119700-31119900,31120032-31120218,
            31120339-31120415,31120738-31120815,31120858-31120974,
            31121047-31121175,31121327-31121479,31121589-31122044,
            31122122-31122239,31122385-31122575,31123140-31123415,
            31123524-31123700,31124040-31124141,31124227-31124459,
            31125563-31125764
          Length = 937

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 21/37 (56%), Positives = 27/37 (72%)
 Frame = +2

Query: 257  DQGKWAEMVIENIASSGKFSSDRTIAQYAREIWGVEP 367
            DQ  W  M I N ASS KF+SDRTI +YA++IW ++P
Sbjct: 897  DQKLWTRMSILNTASSSKFNSDRTIHEYAKDIWDIKP 933


>05_03_0017 -
           7392742-7393110,7393212-7393319,7393522-7394079,
           7394186-7394311,7394396-7394521,7394673-7395137,
           7396822-7396901,7397394-7397664
          Length = 700

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = +3

Query: 9   KLRGVISAIYQKSAVKICSAVPEITRYKQTDRQKK*ILYFWYR*RIYIHICLVKKILLTL 188
           K+ GVI  +   S    C  +  +TR   T+  +    Y+W R  IY+   L+   L T+
Sbjct: 355 KIEGVIEEVVMGSQASWCKQLTTLTRRSFTNMSRD-FGYYWLRIVIYV---LMAVCLGTI 410

Query: 189 QTDASILFISIDDLNNC 239
             D    + +I    +C
Sbjct: 411 YYDVGTSYAAIQARASC 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,738
Number of Sequences: 37544
Number of extensions: 253367
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)