Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E11
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical pr...    70   9e-13
U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical pr...    70   9e-13
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    29   2.6  
Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical
           protein T22F3.3b protein.
          Length = 846

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 29/47 (61%), Positives = 37/47 (78%)
 Frame = +2

Query: 257 DQGKWAEMVIENIASSGKFSSDRTIAQYAREIWGVEPSWEKLPAPHE 397
           DQ KW+ M + NIAS+GKFS+DRTI +YAREIWG++     LPAP+E
Sbjct: 795 DQEKWSRMALYNIASTGKFSTDRTITEYAREIWGIDQFESSLPAPYE 841


>U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical
           protein T22F3.3a protein.
          Length = 882

 Score = 70.1 bits (164), Expect = 9e-13
 Identities = 29/47 (61%), Positives = 37/47 (78%)
 Frame = +2

Query: 257 DQGKWAEMVIENIASSGKFSSDRTIAQYAREIWGVEPSWEKLPAPHE 397
           DQ KW+ M + NIAS+GKFS+DRTI +YAREIWG++     LPAP+E
Sbjct: 831 DQEKWSRMALYNIASTGKFSTDRTITEYAREIWGIDQFESSLPAPYE 877


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 356 GVEPSWEKLPAPHEVFVKL 412
           G+EP WEK+   HE F+++
Sbjct: 222 GIEPQWEKVTTEHERFLEM 240


>Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical
           protein C35D6.10 protein.
          Length = 300

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 207 ILKRLFVMSKEFFLLSRCECICVTYTKNTIFIF-FVCLSVC 88
           ++KRLF M + F+ L       V  T N  FIF ++  S+C
Sbjct: 58  VVKRLFAMVRIFYYLVIPLIASVILTNNRFFIFKYLTFSIC 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,818
Number of Sequences: 27780
Number of extensions: 240255
Number of successful extensions: 572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)