Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E09
         (191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   1.0  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    23   4.2  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    23   4.2  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    23   4.2  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    23   4.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    23   5.6  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    23   7.4  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    22   9.8  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    22   9.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 130 ATLTEPIIFKYTFSRTFTVI 71
           AT TEP  F  TFS T T+I
Sbjct: 859 ATYTEPTTFTSTFSFTTTII 878


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 154 LTSQQLSYATLTEPIIFKYTFSRTFTVIL 68
           L  +QLSYA+  + +     F  +FT++L
Sbjct: 179 LNPEQLSYASTAQTVGLNTGFFLSFTILL 207


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 69   KITVNVRENVYLNIIGSVNVA*DSCWDVRYGMLQMCQVKL 188
            KI +N+ E  +LNI  S+ +   +  ++ YG+L   ++ L
Sbjct: 1444 KILLNIYEKSWLNIAESLTILLSTDANLIYGILSGDELSL 1483


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 51  IHFYMLKITVNVRENVYLNIIGSVNVA*DSCW-DVRYGMLQMCQVK 185
           IH   ++ T   + NV +++I  V +   S   DV YG ++ C+VK
Sbjct: 73  IHVDYVEETKEKKFNVGISVIVRVTLKDGSFHEDVGYGSIENCRVK 118


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 187 NFTWHICNIPYLTS 146
           ++TWH+C  P+  S
Sbjct: 346 DYTWHLCKSPFKRS 359


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 42  NTYIHFYMLKITVNVRENVYLNIIGS 119
           +TY+     +I  N  E+VY+N IG+
Sbjct: 402 DTYLETMFPQIARNKTEHVYINHIGN 427


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 78  VNVRENVYLNIIGSVN 125
           VN+R+++YL I+ SV+
Sbjct: 410 VNLRKSIYLTIMSSVD 425


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 181 TWHICNIPYLTSQQLSYATLTEPIIFKYT 95
           T  +  I Y+T   L    L +P++ KY+
Sbjct: 598 TSRMTQIKYMTDGMLQRECLVDPLLSKYS 626


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  FYMLKITVNVRENVYLNI 110
           FY  KI   +R+++YL +
Sbjct: 217 FYAAKIVKEIRDDIYLQL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,460
Number of Sequences: 5004
Number of extensions: 13899
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)