Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E09
         (191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   0.91 
04_03_0979 + 21389457-21389469,21390053-21390139,21390253-213903...    26   4.9  
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065...    25   6.4  
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026...    25   8.5  
08_01_0980 + 9877030-9877307,9877727-9877837,9877928-9878009,987...    25   8.5  

>03_03_0090 + 14367033-14367279,14367402-14368205,14368314-14370039,
            14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 179  LAHLQHSISHVPTTILCDINRTNYI*IHVFADI 81
            + HL+ S  ++   I+ ++N TNYI   +F+D+
Sbjct: 953  IIHLRWSEGYLNAAIIVNLNSTNYITALIFSDV 985


>04_03_0979 +
           21389457-21389469,21390053-21390139,21390253-21390359,
           21390652-21390768,21391154-21391199,21392518-21392591,
           21392785-21392838,21392926-21393030,21393126-21393184,
           21393273-21393483,21393640-21393699
          Length = 310

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 181 TWHICNIPYLTSQQLSYATLTEPIIFKYTFSRTFTVILSI*KCI*VLCF 35
           TW +C + Y    Q+ Y +L    + + T+  T T      K + V+C+
Sbjct: 106 TWQVCTVQYWYLGQILYKSL---YVSRNTYIHTGTAEWQFTKTVNVVCY 151


>04_04_0742 +
           27706150-27706198,27706306-27706376,27706490-27706571,
           27706695-27706810,27706899-27707075,27707148-27707195,
           27707786-27707863,27708724-27708837
          Length = 244

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 170 LQHSISHVPTTILCDINRTNYI*IHVFADIHCYFKHIKMYISI 42
           ++H+   +P    CDI  T    + + +D HC  K +   +++
Sbjct: 51  VRHACGILPPRSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAV 93


>12_02_0410 +
           18701258-18701327,18701398-18701630,18701782-18702639,
           18703006-18703865,18704285-18704395,18704486-18704567,
           18704643-18704735,18704795-18704989
          Length = 833

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 152 HVPTTILCDINRTNYI*IHVFADIHCYFKHIKMYISIM 39
           HVP     D    N+     F D+H +FK  KM I+++
Sbjct: 634 HVPEDAFKDGPNANFT--FTFKDLHAFFKMDKMDINLV 669


>08_01_0980 +
           9877030-9877307,9877727-9877837,9877928-9878009,
           9878085-9878177,9878262-9878456
          Length = 252

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 152 HVPTTILCDINRTNYI*IHVFADIHCYFKHIKMYISIM 39
           HVP     D    N+     F D+H +FK  KM I+++
Sbjct: 53  HVPEDAFKDGPNANFA--FTFKDLHAFFKMDKMDINLV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,492,898
Number of Sequences: 37544
Number of extensions: 65665
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)