Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E09
         (191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine...    27   1.4  
Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    26   4.3  
U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF025465-4|AAB71029.1|  297|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    25   7.4  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine
           receptor protein 6 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 127 TLTEPIIFKYTFSRTFTVILSI*KCI*VLCFNWFSIINKIHY 2
           ++  P+I KY       V LS+   + V  +N+  +I  IHY
Sbjct: 304 SIVTPLILKYLSFTMIMVALSVTCTVFVSFYNFLKMIQNIHY 345


>Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical
           protein K03D3.12 protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 12  LFIIENQLKHNTYIHFYMLKITVNVRENVYLNII 113
           L  +E+   +N YI+ + L ITV V + +Y++++
Sbjct: 211 LTYLESPRLNNLYIYIFCLTITVMVVKVIYISLL 244


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 15  FIIENQLKHNTYIHFYMLKITVNVRENVYLNIIGSVNV 128
           F+ +++   +T+I F ML  T  V  N YL  +  +N+
Sbjct: 161 FLFQHETYDDTFISFLMLPNTTAVNFNTYLWFLLYLNI 198


>U50301-9|AAB37047.1|  305|Caenorhabditis elegans Hypothetical
           protein F20D6.2 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 101 IHVFADIHCYFKHIKMYI 48
           I + ++IH YFKHI++++
Sbjct: 252 IFINSEIHPYFKHIRLFM 269


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -2

Query: 91  SRTFTV---ILSI*KCI*VLCFNWFSI 20
           S+ FT+   I  + KC  V CFNWF +
Sbjct: 274 SKAFTIDYAIAFLQKCDQVKCFNWFGL 300


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 18  IIENQLKHNTYIHFYMLKITVNVREN 95
           I  +QLK N + H Y L+I +N  +N
Sbjct: 54  IYRDQLKRNYFSHEYRLEINLNHLKN 79


>AF025465-4|AAB71029.1|  297|Caenorhabditis elegans Hypothetical
           protein K02E7.9 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 135 LMRH*QNQLYLNTRFRGHSLLF*AYK 58
           +MRH +NQ+  +T+F    L+F A K
Sbjct: 224 VMRHVENQIIRDTKFPNERLIFLADK 249


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 137 ILCDINRTNYI*IHVFADIHCYFK 66
           I C I   N   IH+F  ++ YFK
Sbjct: 372 IFCQILAQNNFEIHIFQKLYIYFK 395


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
           protein Y11D7A.14 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  IIENQLKHNTYIHFYMLKITVNVRENVYLNI 110
           I E + K N YI  +++ I  N+R   YLNI
Sbjct: 751 ISELETKRNNYISSFIILIQANIR---YLNI 778


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,471,495
Number of Sequences: 27780
Number of extensions: 74811
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)