Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E09
         (191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   7.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   7.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/16 (37%), Positives = 7/16 (43%)
 Frame = +2

Query: 74  NSECPRKRVFKYNWFC 121
           N  C    + KY  FC
Sbjct: 189 NKSCTDSDIEKYKMFC 204


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 99  TRFRGHSLL 73
           T+ RGHSLL
Sbjct: 640 TKARGHSLL 648


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 144 NNYLMRH*QNQLYLNTRFR 88
           N ++  H   Q+Y   RFR
Sbjct: 376 NGWICEHRWRQIYNMVRFR 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,938
Number of Sequences: 438
Number of extensions: 1063
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)