Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E08
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0568 - 5052608-5052937                                           30   1.3  
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899...    29   3.0  
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007           28   5.2  
12_01_0730 + 6505759-6508806                                           28   6.9  
12_01_0714 + 6223269-6226250                                           28   6.9  
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    28   6.9  
12_01_0686 - 5855216-5858263                                           27   9.2  
01_01_1237 - 10047417-10047934,10048899-10049136                       27   9.2  

>08_01_0568 - 5052608-5052937
          Length = 109

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 369 VGKDVVQAGVASYDVDQDEVKYHKY-YQWVCFVLFFQAILFYVPRYLWKTWEG 524
           VG      G  S DVD+++++ H+   + V  +   +AIL  + R  W+ WEG
Sbjct: 8   VGMGAWSQGGGSRDVDEEKIRCHRLGSESVSPLELREAILGDLGRRWWRVWEG 60


>05_05_0292 +
           23889536-23889568,23889753-23889828,23889932-23889996,
           23890235-23890294,23890391-23890473,23890584-23890688,
           23890942-23891566,23892008-23892198,23892292-23892400,
           23892602-23892750,23892810-23892824,23893139-23893365,
           23893464-23893477
          Length = 583

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 352 TGSSAASGRTSCRRVSPPTMSTRTKLNTTSTISGFVSYSSFKRSCF 489
           +GSSA   ++S + +  P M T+ KL      S  ++  S+K +CF
Sbjct: 215 SGSSAIFQKSSLKSIRKPYMPTQRKLLKLCNCSVEMTRKSYKDACF 260


>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
          Length = 272

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -1

Query: 269 VTNILSRSNEKRKRDQDDHSSFVVXKRNTLLSMHTVSSLSSPF--TEPNTSN 120
           + + L    ++ K+ Q+++SS  + + +TLL  H    LS+P   T  N+SN
Sbjct: 166 IVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPQQVLSAPGQPTAVNSSN 217


>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 492 VPRYLWKTWEGGRIQMLVLDLN 557
           +P++ WKTW+G  +Q +VL+++
Sbjct: 549 IPQWAWKTWKG--LQFIVLNIS 568


>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 492 VPRYLWKTWEGGRIQMLVLDLN 557
           +P++ WKTW+G  +Q +VL+++
Sbjct: 527 IPQWAWKTWKG--LQFIVLNIS 546


>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 494 SSLPMENVGGWPHPNAGP*SQLXHCRRRL 580
           SS   E+ G  P P  G  S + HCR+RL
Sbjct: 118 SSCFQEDSGRPPFPRCGEVSDMVHCRKRL 146


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 492 VPRYLWKTWEGGRIQMLVLDLN 557
           +P++ WKTW+G  +Q L+L+++
Sbjct: 549 IPQWAWKTWKG--LQFLLLNMS 568


>01_01_1237 - 10047417-10047934,10048899-10049136
          Length = 251

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 23  AHALYFLXDLRPXPLKXCPGAAADR-XLANAPPCLTYSVP*RGYSSSTLCASTT 181
           AH      DLRP P    PG ++     A+APP   +S P +  S+S    STT
Sbjct: 161 AHGQGLPPDLRP-PAAEAPGPSSSAGAAADAPPTFDFSHP-KNVSNSPADTSTT 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,394
Number of Sequences: 37544
Number of extensions: 349174
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)