Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E08
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 172 CTQCRA*VAPSRNRIRQTWRC 110
           C QC   +A + +RIRQ  +C
Sbjct: 545 CQQCVGNLASNNDRIRQVTKC 565


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 172 CTQCRA*VAPSRNRIRQTWRC 110
           C QC   +A + +RIRQ  +C
Sbjct: 545 CQQCVGNLASNNDRIRQVTKC 565


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 172 CTQCRA*VAPSRNRIRQTWRC 110
           C QC   +A + +RIRQ  +C
Sbjct: 545 CQQCVGNLASNNDRIRQVTKC 565


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 358 SSAASGRTSCRRVSPPTMSTRTKLNTTSTISGFVSYS 468
           SSA  G       SP T S  + L+  +  +  V+Y+
Sbjct: 20  SSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYA 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 503 VARNVKQDRLKEEYE 459
           VARN K+D LKE  E
Sbjct: 429 VARNKKKDLLKEILE 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,265
Number of Sequences: 438
Number of extensions: 3431
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)