Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E07
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   1.6  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   2.2  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   5.0  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    25   6.6  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   6.6  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   6.6  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   8.7  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 284 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 132
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 256 NGRSRSDFSLKTILDKPSFILSV 188
           N R++++ SLK +  +PSF+L+V
Sbjct: 16  NTRTKAELSLKQLEKEPSFVLAV 38


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -2

Query: 274 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 122
           +T P R NG S   F+L T    PS+ LS +      F Y+S       + SHP ++ G
Sbjct: 1   MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 63  DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 242
           DLKL++ KL    K   ER   ++   +T    EKN+ +     + ++  +   L+ K  
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385

Query: 243 L----DLPFRAGAVK 275
           L    D  FRA  +K
Sbjct: 386 LISHYDDDFRAKELK 400


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 233 FTQNNIGQTKFYFECIHKVDNVLFIFVECITSSFD 129
           FT+   G+ +  +EC+   D++LF+  + I S++D
Sbjct: 12  FTKIATGKVRDLYECVEFPDDLLFVATDRI-SAYD 45


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 413 LELRCHRHY*HRHTQIFQQRFEYNTANKF 327
           L++R H      HT I+   F+ N+ NKF
Sbjct: 6   LQIRWHYDANDDHTPIYSVDFQKNSLNKF 34


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 277 CLTAPARNGRSRSDFSLKTILDKPSFI--LSVSIKSI 173
           CLT P      +SDFSL+   D       ++V+IKSI
Sbjct: 377 CLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSI 413


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 96  DDKERYERMPFVKTGCDTFDKY-EKNVIDFMD 188
           D+K R   +P +  GC  + KY + + +DF D
Sbjct: 34  DEKNRINAVPLLLLGC-LYGKYKDDDFVDFFD 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,784
Number of Sequences: 5004
Number of extensions: 31874
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)