Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E07
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   4.3  
Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 295 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 173
           D  +  C+   AR    R +F +    D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 84  KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 257
           K+  + +E + + P +K   + F   +  + DFM +++ +  LS I    K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657


>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 90  HFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIK 203
           HF D   Y ++   K  CD FD   K++ D  + ++IK
Sbjct: 123 HFQDALHYPKVDDFKIECDEFDL--KSICDDFEGMQIK 158


>U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical
           protein F28A12.3 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 251 KIQKRLFTQNNIGQTKFYFEC 189
           K+ K++FT+ NI   K+Y +C
Sbjct: 36  KLTKKMFTELNISPDKYYGDC 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,536,209
Number of Sequences: 27780
Number of extensions: 174124
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)