Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E06
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   154   6e-39
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   153   2e-38
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.0  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   2.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   6.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   6.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.2  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  154 bits (374), Expect = 6e-39
 Identities = 78/151 (51%), Positives = 92/151 (60%)
 Frame = +2

Query: 38  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
           MSKVS   +   V  +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP
Sbjct: 1   MSKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60

Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
            M +CILGD    D AK   V  M  +                        SE LIKQIP
Sbjct: 61  NMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120

Query: 398 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
           RLLGPGL+KAGKFP  +SH + +  KI EVK
Sbjct: 121 RLLGPGLSKAGKFPSPVSHSDDLYGKIIEVK 151


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  153 bits (370), Expect = 2e-38
 Identities = 78/151 (51%), Positives = 93/151 (61%)
 Frame = +2

Query: 38  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
           MSKVS  ++   V  +++ S+EKKR F ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP
Sbjct: 1   MSKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRP 60

Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
            M +CILGD    D AK   V  M  +                        SE LIKQIP
Sbjct: 61  NMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIP 120

Query: 398 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
           RLLGPGL+KAGKFP  +SH + +  KI EVK
Sbjct: 121 RLLGPGLSKAGKFPSPVSHADDLYGKITEVK 151


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 53  RDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRF 181
           ++ L++ V      SKE  ++   T+E Q+   N+D QK   F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 67  IERITRYFRHFYEPTTLH--VHL 5
           I++IT  F HF+ P  LH  VHL
Sbjct: 216 IDKITSLFIHFFPPLVLHTIVHL 238


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 71   CVNAVIQSSKEKKRKFLETVELQIGLKNYD-PQKDKRFSG 187
            C N +++SS   K  F +TV +     +YD P+ D  + G
Sbjct: 939  CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 77  NAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 223
           +A IQ + E+K  FL ++     + N D  KD+        KY+  P++
Sbjct: 170 DAPIQINHEQKEDFLVSIPRPTPMTNLDDGKDEIGQPDPHRKYMAPPRV 218


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 141 ICSSTVSKNLRFFSFEDWMTAL 76
           IC S  +  L F + EDW+ AL
Sbjct: 900 ICESMKNVKLDFVTLEDWLKAL 921


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 57  IRSMSALTQSSSLQKRRNVNF*KLLNCK 140
           IR   +  + + ++KRRN+N+ + L+CK
Sbjct: 620 IRYGKSHNEDTCIKKRRNLNYNENLSCK 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,609
Number of Sequences: 5004
Number of extensions: 25585
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)