Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E06
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 160 5e-40
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 160 6e-40
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 158 3e-39
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 158 3e-39
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 34 0.071
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 28 3.5
02_05_1180 + 34776151-34776480,34776578-34776760,34776849-347771... 28 3.5
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 27 6.2
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 27 6.2
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 27 6.2
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 160 bits (389), Expect = 5e-40
Identities = 77/151 (50%), Positives = 102/151 (67%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSK+ D L E ++ + S+EK+RKF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
K++VC+LGD QH +EA+++ + MD E SE++IKQIP
Sbjct: 61 KLKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 398 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
RLLGP GKFP L++HQES+ K++E K
Sbjct: 121 RLLGP-----GKFPTLVTHQESLESKVNETK 146
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 160 bits (388), Expect = 6e-40
Identities = 79/151 (52%), Positives = 100/151 (66%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSK+ + L E ++ V+ KEK RKF ETVELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
KM+VC+LGD QH +EA+++ + MD E SE++IKQIP
Sbjct: 61 KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 398 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
RLLGP GKFP L++HQES+ K++E K
Sbjct: 121 RLLGP-----GKFPTLVTHQESLESKVNETK 146
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 158 bits (383), Expect = 3e-39
Identities = 78/152 (51%), Positives = 101/152 (66%)
Frame = +2
Query: 35 KMSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPR 214
++ K+ + L E ++ V+ SKEK RKF ETVELQIGLKNYDPQKDKRFSG+VKL +IPR
Sbjct: 18 QLHKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 77
Query: 215 PKMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQI 394
PKM+VC+LGD QH +EA+++ + MD E SE++IKQI
Sbjct: 78 PKMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQI 137
Query: 395 PRLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
PRLLGP GKFP L++HQES+ K++E K
Sbjct: 138 PRLLGP-----GKFPTLVTHQESLESKVNETK 164
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 158 bits (383), Expect = 3e-39
Identities = 83/173 (47%), Positives = 107/173 (61%), Gaps = 22/173 (12%)
Frame = +2
Query: 38 MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
MSK+ D L E ++ + S+EK+RKF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRP
Sbjct: 1 MSKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
KM+VC+LGD QH +EA+++ + MD E SE++IKQIP
Sbjct: 61 KMKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120
Query: 398 RLLGPGLNKA----------------------GKFPGLLSHQESMTQKIDEVK 490
RLLGPGLNKA GKFP L++HQES+ K++E K
Sbjct: 121 RLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNETK 173
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 33.9 bits (74), Expect = 0.071
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 92 SSKEKKRKFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAK 268
S+ EKKR F ETVE + L DP++ D+ G + L + ++V + + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 196 LDGAGETLVLLRVIVLETD 140
LDGAGE LVLLR +L+ D
Sbjct: 65 LDGAGERLVLLRADLLDPD 83
>02_05_1180 +
34776151-34776480,34776578-34776760,34776849-34777198,
34777430-34777631
Length = 354
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 241 TENAHLHLRTRDVLKLDGAGETLVLLRVIVLETD 140
T+NAHL L LDGAGE L L R VL+++
Sbjct: 61 TKNAHL-------LALDGAGERLTLCRADVLDSE 87
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 394 SASPWSWSQ*GWQVPWSLIP 453
SA WSW GW VP + P
Sbjct: 273 SAFAWSWGPLGWLVPSEIFP 292
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 394 SASPWSWSQ*GWQVPWSLIP 453
SA WSW GW VP + P
Sbjct: 397 SAFAWSWGPLGWLVPSEIFP 416
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 394 SASPWSWSQ*GWQVPWSLIP 453
SA WSW GW VP + P
Sbjct: 399 SAFAWSWGPLGWLVPSEIFP 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,647,608
Number of Sequences: 37544
Number of extensions: 168100
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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