Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E06
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   180   4e-46
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   135   1e-32
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    90   7e-19
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.      27   7.4  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  180 bits (439), Expect = 4e-46
 Identities = 84/151 (55%), Positives = 105/151 (69%)
 Frame = +2

Query: 38  MSKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 217
           MSKVSR++L E +  V++ S EK RKF ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 1   MSKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRP 60

Query: 218 KMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 397
            M+VC+ GDQ H DEA   D+P M A+                        SESLIKQIP
Sbjct: 61  NMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIP 120

Query: 398 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
           R+LGPGLNKAGKFP +++H ES+  K DE++
Sbjct: 121 RILGPGLNKAGKFPSVVTHGESLQSKSDEIR 151


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  135 bits (327), Expect = 1e-32
 Identities = 61/114 (53%), Positives = 76/114 (66%)
 Frame = +2

Query: 149 KNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXX 328
           KNYDPQKDKRFSG+++LK+IPRP M+VC+ GDQ H DEA   D+P M A+          
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 329 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIR 121


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 42/90 (46%), Positives = 53/90 (58%)
 Frame = +2

Query: 221 MQVCILGDQQHCDEAKQLDVPCMDAEXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 400
           M+VC+ GDQ H DEA   D+P M A+                        SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 401 LLGPGLNKAGKFPGLLSHQESMTQKIDEVK 490
           +LGPGLNKAGKFP +++H ES+  K DE++
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIR 90


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 150 LRPICSSTVSKNLRFFSFEDWMTALTHS 67
           L PI + T  +  +FF+FE +  A THS
Sbjct: 65  LPPILAETPKRATKFFTFEQYKIAFTHS 92


>Z83246-1|CAB05842.2|  312|Caenorhabditis elegans Hypothetical
           protein ZK795.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 128 VELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQH 253
           ++L++G   YDP          ++KY P+ KM + ILG + H
Sbjct: 135 LDLKMGQVTYDPIAKPEKIEKERIKYPPQAKMGMRILGYRIH 176


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 222 ILGRGMYLSLTVPEKRLSFCG 160
           I G G ++  T+PE+ + FCG
Sbjct: 665 ISGSGSFVEATIPEETIRFCG 685


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 222 ILGRGMYLSLTVPEKRLSFCG 160
           I G G ++  T+PE+ + FCG
Sbjct: 679 ISGSGSFVEATIPEETIRFCG 699


>AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 222 ILGRGMYLSLTVPEKRLSFCG 160
           I G G ++  T+PE+ + FCG
Sbjct: 679 ISGSGSFVEATIPEETIRFCG 699


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,191,919
Number of Sequences: 27780
Number of extensions: 149853
Number of successful extensions: 352
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)