Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E05
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    28   0.54 
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   2.2  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   2.9  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    25   3.8  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   3.8  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    24   6.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   6.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.8  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   8.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    24   8.8  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 125 NTPASQST-SQKYRRPRSERCRSLKSASKQRERQRP 229
           +TP + S  SQK  R  S + R+LK+ +KQR  Q P
Sbjct: 100 HTPQTNSQKSQKTPRLSSNKRRTLKNDAKQRNSQSP 135


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 300 CRSCFSFLSRWFRCVRHRGLYLSGGR 223
           C    SF  +W   V  RGL LSGG+
Sbjct: 599 CSFVLSFPEKWSTQVGTRGLQLSGGQ 624


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = -2

Query: 225 RCLSLCFDADLSERHRSDRGRRYFWLVD*EAGVLQXXXXXXXXXXGPW*RHSGCAQLARN 46
           +C+ +  ++   +   + R  +Y   V    G              P     GCA+  RN
Sbjct: 127 QCIIISGESGAGKTEAAKRIMQYITHVSKSVGTEIERVSEIILATNPLLESFGCAKTLRN 186

Query: 45  NGLRKRGRVLEL 10
           N   + G+ LE+
Sbjct: 187 NNSSRHGKYLEM 198


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 138 LSRRARSTDAPGRSGVARSNRRQNKGKDNDRRSDRVLGVGHNGTI 272
           LS++ +S+  P    +   N+RQ+  + N    +R+ G G N  +
Sbjct: 66  LSKKLKSSMTPRELQIWFQNKRQSLRRSNCLSRNRLEGTGENSLL 110


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +3

Query: 114 GAPATLPPLSRRARSTDAPGRSGVARSNRRQNKGKDNDRRSDRVLGVGHNGTIDSEN*NN 293
           GAP      S  A  + +      + S+  ++  +DND  S        + + DS++ ++
Sbjct: 90  GAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 149

Query: 294 SGRGTQEKSS 323
           S     E SS
Sbjct: 150 SSDSESESSS 159



 Score = 25.0 bits (52), Expect = 3.8
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 SRRARSTDAPGRSGVARSNRRQNKGKDNDRRSDRVLGVGHNGTIDSEN*NNSGRGTQEKS 320
           S    S++    S  + S+  ++  +DND  S        + + DS++ ++S     E S
Sbjct: 207 SESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 266

Query: 321 S*ES 332
           S +S
Sbjct: 267 SKDS 270



 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 141 SRRARSTDAPGRSGVARSNRRQNKGKDNDRRSDRVLGVGHNGTIDSEN*NNSGRGTQEKS 320
           S    S++    S  + S+  ++  +DND  S        + + DS++ ++S     E S
Sbjct: 153 SESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESS 212

Query: 321 S 323
           S
Sbjct: 213 S 213


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -2

Query: 279 LSRWFRCVRHRGLYLSGGRCLSLCFDADLSE 187
           ++ +FR +   GL+L G  CL++    ++++
Sbjct: 272 INMFFRLLDQEGLFLGGSSCLNVVAAVEMAK 302


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 141 SRRARSTDAPGRSGVARSNRRQNKGKDNDR 230
           +R   +T  P RS  + +N+ Q KG+ N++
Sbjct: 12  ARGYATTSIPSRSASSPANKNQVKGEKNNK 41


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 27  LACAVHYCERVAH 65
           L+C  H+CE++ H
Sbjct: 706 LSCKTHFCEKLCH 718


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 108 TVGAPATLPPLSRRARSTDAPGRSGVA 188
           T GAP+    LSR A ++    R+G++
Sbjct: 205 TTGAPSGKASLSRAASNSSTSARAGIS 231


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +3

Query: 75  DVTRV----RVLPELTVGAPATLPPLSRRARSTDAP 170
           DVTR     R+L   T+      PPL +R+R+  +P
Sbjct: 391 DVTRSVSDHRILSSSTINDGEVAPPLPQRSRTISSP 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.121    0.313 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,125,608
Number of Sequences: 5004
Number of extensions: 17116
Number of successful extensions: 42
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)