Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E04
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 89 3e-19
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 32 0.057
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.40
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 1.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 4.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 6.5
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 8.6
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 25 8.6
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 8.6
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1095
Score = 89.4 bits (212), Expect = 3e-19
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 1/160 (0%)
Frame = +3
Query: 9 GVLAQFGGVQFAGACARAVPLLAALISHPESRSVENINATENAISAVAKIIKYNHSQI-N 185
GV AQ GG +A C+ A+P L ++ P++R E I ATEN A+ KI ++ ++ +
Sbjct: 934 GVAAQHGGELYAEICSSALPALFKMLELPDARDEEQIYATENICVAICKICRFCSQRVQD 993
Query: 186 RDEIIRHWLTWLPVTEDTEEAPHVYSLLCELASSGHAALATADAPRHVIATLAEAFLRDA 365
D+++ +W+ LPVT D ++AP+ Y+ L EL H A+A + P +I LAE F
Sbjct: 994 LDKVVTYWINTLPVTHDEDDAPYAYTFLAELMEQNHVAVA-SQMPT-IITILAETFASGV 1051
Query: 366 VPTDNPAYAQMVALVRQIQGNAELFNTCLMQLSNEHKEAL 485
+ + V + A+ N+ + LS +++ AL
Sbjct: 1052 LRGRTLTRLMEASKVYLARFPADQVNSVIATLSVDNQRAL 1091
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 31.9 bits (69), Expect = 0.057
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 123 ATENAISAVAKIIKYNHSQINRDEIIRHWLTWLPVTEDTEEAPHVYSLLCEL 278
A +NAI ++++I +N + I D+++ + LP+ ED E +Y ++ L
Sbjct: 952 ALDNAIGCISRLILHNQNAIPVDQVLPIVFSKLPLKEDYLENAPLYHMILAL 1003
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.40
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Frame = -2
Query: 409 TSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPL--LASSHNSEYTCGASSV 236
TS+++ + + S AS S+S+A + +S++AS++ LASS + + +SS
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSST 164
Query: 235 SSVTGSHVNQCLMISSLLICEWLYLMILATAEIAFSVALMFSTDRDSGWEMSAASSGTAR 56
+S T + SS L A + A S +L S+ +S +A SS +
Sbjct: 165 NSTTSATPTSSATSSS--------LSSTAASNSATSSSLA-SSSLNSTTSATATSSSLSS 215
Query: 55 AHAPANCTPPNCASTPL 5
A + T + AS+ L
Sbjct: 216 TAASNSATSSSLASSSL 232
Score = 28.7 bits (61), Expect = 0.53
Identities = 30/123 (24%), Positives = 49/123 (39%)
Frame = -2
Query: 376 SVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEYTCGASSVSSVTGSHVNQCLM 197
SV T +R A+ S AS+ + + +SS S + +SS +S T + +
Sbjct: 51 SVPTLLKR-ATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSL 109
Query: 196 ISSLLICEWLYLMILATAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCA 17
SS L ++ +A S S S S ASS T + ++ T +
Sbjct: 110 TSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTS 169
Query: 16 STP 8
+TP
Sbjct: 170 ATP 172
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = -2
Query: 436 SSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEY 257
S+ L + T+AT + L+ ++ +++S +T A++ S + A S+N+
Sbjct: 356 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLT--SANSTTSTSVSSTAPSYNTSS 413
Query: 256 TCGASSVSSVTGSHVNQCLMISS 188
SSVSS S N S+
Sbjct: 414 VLPTSSVSSTPLSSANSTTATSA 436
Score = 27.1 bits (57), Expect = 1.6
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = -2
Query: 436 SSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEY 257
S+ L + T+AT + L+ ++ +++S +T A++ S + A S+N+
Sbjct: 470 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLT--SANSTTSTSVSSTAPSYNTSS 527
Query: 256 TCGASSVSSVTGSHVNQCLMISS 188
SSVSS S N S+
Sbjct: 528 VLPTSSVSSTPLSSANSTTATSA 550
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 1.2
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 436 SSALPCICRTSATICAYAGL-SVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSE 260
S+ P A+ + L S+ +AS N +ASV T AS +S +++ +S
Sbjct: 150 SATTPAASEAQASSDILSSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISSV 209
Query: 259 YTCGASSVSSVTGSHV 212
SSVS+V S +
Sbjct: 210 VDSATSSVSTVIPSSI 225
Score = 26.6 bits (56), Expect = 2.1
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 481 ASLCSLLNCIRHVLKSSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRGASAVA 302
+SL SL + L +S P S + T S SA+ +++ S++
Sbjct: 167 SSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIPSSII 226
Query: 301 SAACPLLASSHNSEYTCGASSVSSVTGS 218
SAA P AS T ASS +S T +
Sbjct: 227 SAAPPDSASESTPASTSYASSTTSATST 254
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 319 GASAVASAACPLLA-SSHNSEYTCGASSVSSVTGSHVNQ 206
G + +S+ C LA +HN C S+VSS+ G V++
Sbjct: 111 GLKSESSSTCGYLARQAHNFLLQCFRSNVSSLRGQKVHE 149
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 57 RAVPLLAALISHPESRSVENINATENAISAVAKII 161
R P+L SRS+E+ +AT A++A++K +
Sbjct: 1651 RLTPVLIDTCHILRSRSLESRDATRKALAAISKFL 1685
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -2
Query: 250 GASSVSSVTGSHVNQCLMISSLLICEWLYL 161
GAS ++V + V C+++++ +CE+L++
Sbjct: 553 GASQWAAVACTSVVSCIIMAAASLCEYLFV 582
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 4.9
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 409 TSATICAYAGLSVGTASRRNASASVAMTWRG--ASAVASAACPLLASSHNSEYTCGASSV 236
+S T + GTAS A+A+ A T AS ++ ASS +S T SSV
Sbjct: 1093 SSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSV 1152
Query: 235 SSVTGSH 215
++ T S+
Sbjct: 1153 TTDTPSN 1159
Score = 24.6 bits (51), Expect = 8.6
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = -2
Query: 493 AICKASLCSLLNCIRHV-LKSSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRG 317
++ +SL S + + + SS P + T + + G +A+ + +A + +
Sbjct: 879 SVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSS-AI 937
Query: 316 ASAVASAACPLL---ASSHNSEYTCGASSVSSVTGS 218
S+VA++ P ASS +S S+ +S TGS
Sbjct: 938 TSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGS 973
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 4.9
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = -2
Query: 376 SVGTASRRNASASV--AMTWRGASAVASAACPLLASSH-NSEYTCGASSVSSVTGSHVNQ 206
SV +S AS+S+ + T +S+V +++ P+ +S+ S G+SSV S S V+
Sbjct: 3448 SVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVIGSSSVLSYASSIVSS 3507
Query: 205 CLMISSLL 182
+ SSLL
Sbjct: 3508 VSLNSSLL 3515
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 500 REGHLQGLFMFVAQLHQTCIKKLRIT 423
R+ ++ L +++ +HQ C+K L I+
Sbjct: 840 RDPQIEPLIIWIKTVHQFCVKSLNIS 865
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 352 SCATPYPLTILHTR 393
SCAT YPL I TR
Sbjct: 129 SCATTYPLDIARTR 142
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 497 EGHLQGLFMFVAQLHQTCIKKLRITLYLSYKRDHLR-VC 384
E GL+ + +L T IK + LSY R LR VC
Sbjct: 348 EFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVC 386
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 495 GPFARPLYVRCSTASDMY*KAPHYLVSVVQARPSARMQDCQ 373
G F +P S +D + K P + +V A+PSAR Q
Sbjct: 259 GAFHQPATTGSSFVADKW-KMPMFTSNVTSAQPSARASPVQ 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,602
Number of Sequences: 5004
Number of extensions: 29152
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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