Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E04
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 72 3e-13
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 66 2e-11
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836... 33 0.13
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098... 30 0.93
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 29 1.6
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 28 3.7
12_01_0068 - 580870-581287,581440-582002 28 5.0
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 28 5.0
04_04_0270 - 24061852-24063264 28 5.0
10_08_0379 - 17373533-17374147 27 6.5
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 27 6.5
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 27 6.5
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 27 6.5
04_04_0901 - 29247518-29247634,29248990-29250273 27 6.5
04_04_0509 - 25763685-25764293 27 6.5
03_02_0707 + 10569261-10571276 27 6.5
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 27 6.5
08_02_1505 - 27581466-27581978,27582054-27582293,27582527-275826... 27 8.7
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 27 8.7
06_03_0801 + 24714725-24715501 27 8.7
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 27 8.7
01_01_0620 - 4621291-4621379,4621722-4621803,4622238-4622282,462... 27 8.7
>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 71.7 bits (168), Expect = 3e-13
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Frame = +3
Query: 9 GVLAQFGGVQFAGACARAVPLLAALISHPESRSVENINATENAISAVAKIIKYNHSQINR 188
GV A+FGG F A+ L +I+HPE++ +NI A +NA+SA+ KI +++ I+
Sbjct: 955 GVCAEFGGHVFRPLVGEALSKLNNVITHPEAKHADNIMAYDNAVSALGKICQFHRDGIDA 1014
Query: 189 DEIIRHWLTWLPVTEDTEEAPHVYSLLCELASSGHAALATADAP--RHVIATLAEAFLRD 362
++I WL LP+ +D EA V+ L + A + + +++ AE
Sbjct: 1015 AQVIPAWLGCLPIKDDKIEAKVVHDQLSSMVERSDADILGPHSQYLPKIVSIFAEVLCNG 1074
Query: 363 AVPTDNPAYAQMVALVRQIQGN--AELFNTCLMQLSNEHKEALQMALST 503
+ +MV L+R+ Q + + L + + LQ LST
Sbjct: 1075 TELATDETTKRMVNLLRRFQQTLPPDFLASTFSSLQPQQQLLLQSILST 1123
>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/90 (33%), Positives = 51/90 (56%)
Frame = +3
Query: 9 GVLAQFGGVQFAGACARAVPLLAALISHPESRSVENINATENAISAVAKIIKYNHSQINR 188
G+ A+FGG F A+ L +I HP + ++N A +NA+SA+ KI +++ I+
Sbjct: 886 GICAEFGGSAFRPHTGEALSRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDA 945
Query: 189 DEIIRHWLTWLPVTEDTEEAPHVYSLLCEL 278
+++ WL+ LP+ D EA V+ LC +
Sbjct: 946 SQVVPAWLSCLPIKNDLIEAKIVHEQLCTM 975
>05_07_0128 +
27879969-27880143,27880232-27881323,27883562-27883698,
27884179-27884409,27884707-27884730
Length = 552
Score = 33.1 bits (72), Expect = 0.13
Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +3
Query: 174 SQINRD-EIIRHWLTW--LPVTEDTEEAPHVYSLLCELASSGHAALATADAPRHVIATLA 344
S +NRD E R L + VT APH + LAS H A++ ADA A +
Sbjct: 340 SAVNRDDEKARLGLLHYGIGVTAAANPAPHHHHHHHHLASPVHDAVSAADAS---TAAMI 396
Query: 345 EAFLRDAVPTDNPAYAQMVALVRQIQGNAELFNTCLMQLSNEHKEALQMA 494
F A T + A AL Q+QG TC S++ K+A +A
Sbjct: 397 LPFTTTAAATPSNVVATSSALADQLQGRLFRDWTCAWHPSSQ-KDAFNIA 445
>05_03_0614 -
16206005-16206586,16207585-16207608,16209746-16209879,
16210703-16210832
Length = 289
Score = 30.3 bits (65), Expect = 0.93
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 292 CPLLASSHNSEYTCGASSVSSVTGS-HVNQCLMISSLLICEWLYLMILATAEIAFSVALM 116
CP S S +C +++ + VT S + I L ++ + +I V L+
Sbjct: 143 CPSTPLSPMSSVSCSSTASTLVTRSCSLTSTTFAPRADIFPNLLVLGIRHTDIKAEVELL 202
Query: 115 FSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
ST RD + SS A +PA +PP+ AS
Sbjct: 203 AST-RDHRCSWAPTSSSMAMTSSPAPLSPPSIAS 235
>04_03_1031 +
21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +3
Query: 282 SSGHAALATADAPRHVIATLAEAF---LRDAVPTDNPAYAQMVALVRQIQGNA-ELFNTC 449
+S + + A D V AT+ +AF + D++ D P Y+Q++ LV++++ + EL +
Sbjct: 645 NSDNVSSAEKDFQAKVKATMEKAFWDLVTDSMRGDKPDYSQLINLVKEVRNSLHELASNE 704
Query: 450 LMQ--LSNEHKEALQMALST 503
L + L N E L L +
Sbjct: 705 LKEEILENIDLEILSQVLQS 724
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -2
Query: 235 SSVTGSHVNQCLM-ISSLLICEWLYLMILATAEIAFSVALMFSTDRDSGWEMSAASSGTA 59
S T ++N+ L+ I + IC WLY++ + + L R+ +S G
Sbjct: 369 SERTVININENLLHIKTAFICSWLYILAMDGLSKLTANELKSQRARERYTALSVEEKGAL 428
Query: 58 RAHAPANCTPPNCAST 11
P N N AST
Sbjct: 429 VQRNPENRERKNSAST 444
>12_01_0068 - 580870-581287,581440-582002
Length = 326
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = -2
Query: 406 SATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEYTCGASSVSSV 227
+AT+ +YA S A +R+ +A++A A+A +S +AS+ S C + +++
Sbjct: 213 AATVDSYASTSFPDAHQRDPAATIAADHSEATASSSR----IASASASASACHSDPAATI 268
Query: 226 TGSH 215
H
Sbjct: 269 AADH 272
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 103 RDSGWEMSA-ASSGTARAHAPANCTPPNCASTP 8
RD G EM+ SS T+R H P T P +TP
Sbjct: 253 RDIGTEMTPLGSSTTSRCHTPIKSTSPARHNTP 285
>04_04_0270 - 24061852-24063264
Length = 470
Score = 27.9 bits (59), Expect = 5.0
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = -2
Query: 427 LPCICRTSATICAYAGLSVGTAS-RRNASASVAMTWRGASAVASAACPLLASSHNSEYTC 251
LP +C + A AG + S + +A+V+ + S +SAA ++ + +S
Sbjct: 4 LPRLCMATGDSAAAAGEGDSSNSGSKQQAAAVSSSSSTVSTSSSAAAAAVSEASSSMSLP 63
Query: 250 GASSVSSVTGSHVNQCLMISSLLICEWLYLMILATAEIAFSVALMFSTD 104
S+S VTGS ++ L S + L L+TA A S A + + D
Sbjct: 64 SLPSLSDVTGS-MSASLAASFAHVTT---LCPLSTAAAAASAAAVAAAD 108
>10_08_0379 - 17373533-17374147
Length = 204
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -1
Query: 128 GGVDVLDGSRLRVG-DERG--EQRHGASARARKLYAAELREHAPR 3
G +D L G RLR +E G + + ARA +LY E+REH R
Sbjct: 114 GSLDALVG-RLRAAYEENGGRPENNPFGARAVRLYLREVREHQAR 157
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 76 ASSGTARAHAPANCTPPNCASTP 8
A++GT PA TPPN A+TP
Sbjct: 21 AAAGTPPLAVPATNTPPNPATTP 43
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 349 ASASVAMTWRGASAVASAACPLLASSHNSEYTCGASSVSS 230
ASA+ A+ G+ + AA P+ S S+ TCG SV +
Sbjct: 10 ASATPAIAGTGSGGGSRAADPVKVSCVRSKVTCGFPSVGA 49
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 225 VTEDTEEAPHVYSLLCELASSGHAALATADAPRHVIATLAEA 350
+TE E+A S L + S ATAD P+H+ TL A
Sbjct: 239 LTEAAEKAKMELSSLTQTNISLPFITATADGPKHIETTLTRA 280
>04_04_0901 - 29247518-29247634,29248990-29250273
Length = 466
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 94 GWEMSAASSGTARAHAPANCTPPNCAST 11
G S ++S T+ A + A+C+PP A+T
Sbjct: 233 GMTRSPSNSSTSTASSSASCSPPTSATT 260
>04_04_0509 - 25763685-25764293
Length = 202
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -1
Query: 128 GGVDVLDGSRLRVG-DERG--EQRHGASARARKLYAAELREHAPR 3
G +D L G RLR +E G + + +ARA +LY E+REH R
Sbjct: 115 GSLDALVG-RLRAAFEENGGRPESNPFAARAVRLYLREVREHQAR 158
>03_02_0707 + 10569261-10571276
Length = 671
Score = 27.5 bits (58), Expect = 6.5
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = -2
Query: 280 ASSHNSEYTCGASSVSSVTGSHVNQCLMISSLLICEWLYLMILATAEIAF-SVALMFSTD 104
ASS N +YTCG S T L ++L I W + + T++ A + FS
Sbjct: 382 ASSLNPDYTCGQPVPVSPTEFPDPSGLDSTTLAIATWQVVCNITTSKGAKPKCCVTFS-- 439
Query: 103 RDSGWEMSAASSGTARAHAPANCTPPNCAST 11
+ + S T P+N P C++T
Sbjct: 440 --AYYNDSVIPCNTCACGCPSNQRGPTCSTT 468
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 370 GTASRRNASASVAMTWRGASAVASAACPLLASSHNSE 260
G+ R A A+ A+ W VA AC LA H+++
Sbjct: 614 GSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQ 650
>08_02_1505 -
27581466-27581978,27582054-27582293,27582527-27582637,
27582732-27582786,27582880-27583016,27583092-27583229,
27583293-27583355,27584379-27584569,27584657-27584732
Length = 507
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 261 SLLCELASSGHAALATADAPRHVIATLAEAFLRDAVPTDNPAYAQMVALVRQIQGNAEL 437
SL E+ A T R + A AFL A+P + AY ++ +LV + G L
Sbjct: 38 SLSKEVRRISRAVRLTVALRRRLAARDVSAFLAFALPPSSEAYTRLTSLVPKGSGPGSL 96
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 237 TEEAPHVYSLLCELASSGHAALATADAPRHVI 332
TEE H +L A++ AA+ATA A V+
Sbjct: 81 TEEQRHAIALAVATAATAEAAVATAQAAAEVV 112
>06_03_0801 + 24714725-24715501
Length = 258
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 398 HLRVCRIVSGYGVAQERLG*CCDDVARRVGRGECRVSAAGELA 270
H + + G VA C + ARR GRG C + A+G +A
Sbjct: 78 HSHIIEVAPGADVAA-----CVAEYARRRGRGVCLMGASGAVA 115
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = -2
Query: 442 LKSSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNS 263
L +S C+ + + A + ++ T + AS++ + S VA+A +ASS +
Sbjct: 93 LIASTTACLLAATTGVIASSTRTLATTTGVIASSTRTIAAATGSHVAAAITAAIASSTCA 152
Query: 262 EYTCGASSVSSVTGS 218
T S ++S TG+
Sbjct: 153 LVTATTSVITSTTGA 167
>01_01_0620 -
4621291-4621379,4621722-4621803,4622238-4622282,
4623701-4623892,4625224-4625337,4625430-4625561,
4626356-4626440,4626526-4626605,4626791-4627034,
4627376-4627617,4628232-4628315,4628427-4628601,
4629351-4629464,4630025-4630236
Length = 629
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +3
Query: 165 YNHSQINRDEIIRHWLTWLPVTEDTEEAPHVYSLLCELASSGHAALATADA 317
Y+ I I HW L ED++ +P L+C L + +A A
Sbjct: 402 YSDDPITTCRKIVHWRNHLKFPEDSKVSPEARDLICRLLCDVDHRIGSAGA 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,091
Number of Sequences: 37544
Number of extensions: 231715
Number of successful extensions: 1242
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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