Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E04
(506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 60 7e-10
Z81051-11|CAI46562.1| 233|Caenorhabditis elegans Hypothetical p... 37 0.010
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 32 0.27
AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical ... 30 0.84
AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical ... 29 1.5
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 29 1.9
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 29 1.9
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 29 1.9
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 29 1.9
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 29 1.9
U58728-4|AAX55696.1| 158|Caenorhabditis elegans Synthetic letha... 29 2.6
U58728-3|AAX55695.1| 305|Caenorhabditis elegans Synthetic letha... 29 2.6
AY223545-1|AAO73070.1| 158|Caenorhabditis elegans SYM-3B protein. 29 2.6
AY221634-1|AAO66457.1| 305|Caenorhabditis elegans SYM-3A protein. 29 2.6
AF125965-2|AAL38961.1| 366|Caenorhabditis elegans Hypothetical ... 28 3.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 3.4
AF067609-9|AAP82661.1| 278|Caenorhabditis elegans Hypothetical ... 28 4.5
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 27 7.8
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 60.5 bits (140), Expect = 7e-10
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Frame = +3
Query: 72 LAALISHPESRSVENIN-ATENAISAVAKIIKYNHSQINR-DEIIRHWLTWLPVTEDTEE 245
LAA+I ++R+ E ATENAISA AKII +++ +L+WLP DTEE
Sbjct: 942 LAAMIQREDARATEESTVATENAISAFAKIIGNVPLPAEAYGKVVEMFLSWLPTYSDTEE 1001
Query: 246 APHVYSLLCELASSGHAAL---ATADAPRHVIATLAEAFLRDAVPTD---NPAYAQMVAL 407
+P++Y+ L EL AAL + PR + L + DA D N ++V +
Sbjct: 1002 SPYIYTCLAELFDKQDAALFGPENQNLPRIFLVCLL-SIANDAFNDDDSGNQTKQRIVTI 1060
Query: 408 VRQIQGNAELF 440
++QI + F
Sbjct: 1061 LKQIYASFPQF 1071
>Z81051-11|CAI46562.1| 233|Caenorhabditis elegans Hypothetical
protein C55A6.12 protein.
Length = 233
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/105 (20%), Positives = 46/105 (43%)
Frame = +3
Query: 150 AKIIKYNHSQINRDEIIRHWLTWLPVTEDTEEAPHVYSLLCELASSGHAALATADAPRHV 329
A+ + H+ +R+ ++RH ++PV T P V+ +S G + +
Sbjct: 74 ARAVNITHTYFDRNSVVRHDYGFMPVKNATRRDPRVHVAYLTTSSQGWSMMEQGQVKEGK 133
Query: 330 IATLAEAFLRDAVPTDNPAYAQMVALVRQIQGNAELFNTCLMQLS 464
+ + F+R + N ++ RQ++ +NT LM++S
Sbjct: 134 MTFHLKQFMRRSFDVGNNNNLEIREFERQLE--LPDYNTMLMKVS 176
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 31.9 bits (69), Expect = 0.27
Identities = 29/105 (27%), Positives = 48/105 (45%)
Frame = -2
Query: 436 SSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEY 257
SS+ + +A A S T S++ ASAS + SAVASA P + S
Sbjct: 2837 SSSTANVASMAAMAAAAQAASTPTTSKQ-ASASTSTP--STSAVASAQTPSTSVPSTSSQ 2893
Query: 256 TCGASSVSSVTGSHVNQCLMISSLLICEWLYLMILATAEIAFSVA 122
A++ S+ +G +N L+ + + L M+L+ I ++A
Sbjct: 2894 AAAAAASSANSGEDINPLLLTALMQNPAILQSMMLSDPSILAALA 2938
>AL021471-1|CAA16295.1| 241|Caenorhabditis elegans Hypothetical
protein Y17D7C.1 protein.
Length = 241
Score = 30.3 bits (65), Expect = 0.84
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 355 CATPYPLTILHTRRWSRLYDRYKVMRSF 438
C T YP TIL R +S L RYK F
Sbjct: 195 CRTAYPPTILRDRHFSTLVARYKTDEEF 222
>AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical
protein F56H1.6 protein.
Length = 381
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = -2
Query: 505 YVERAICKASLCSLLNCIRHVLKSSALPCICRTSATICAYAGLSVGTASRRNASASVAMT 326
+ E + + CS + ++ALP + T AY+ ++ S+RNA +
Sbjct: 126 HAEFVVTDSKYCSKKPSNLSFVSAAALPYVAST-----AYSAFTIARVSQRNAKQQRVLI 180
Query: 325 WRGASAVASAACPLL 281
GA V S A LL
Sbjct: 181 HGGAGGVGSMAIQLL 195
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 426 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 470
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 426 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 470
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
protein F45E10.1e protein.
Length = 1234
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 140 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 184
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 148 TAEIAFSVALMFSTDRDSGWEMSAASSGTARAHAPANCTPPNCAS 14
T ++ + S + G+E S+AS + AHA A TPP S
Sbjct: 560 TYDVLLKQGKITSPVKSFGYEQSSASEDSIVAHASAQVTPPTKTS 604
>U58728-4|AAX55696.1| 158|Caenorhabditis elegans Synthetic lethal
with mec protein3, isoform b protein.
Length = 158
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 185 VDLRVVILDDLSDGRDSVLGGVDVLDGSRLRVGDERGE-QRHGASARARKLYAAEL 21
VDL+V L D+ +V G + +LDG ER E + H AS R ++ +
Sbjct: 13 VDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFNTRFVFCCRI 68
>U58728-3|AAX55695.1| 305|Caenorhabditis elegans Synthetic lethal
with mec protein3, isoform a protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 185 VDLRVVILDDLSDGRDSVLGGVDVLDGSRLRVGDERGE-QRHGASARARKLYAAEL 21
VDL+V L D+ +V G + +LDG ER E + H AS R ++ +
Sbjct: 13 VDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFNTRFVFCCRI 68
>AY223545-1|AAO73070.1| 158|Caenorhabditis elegans SYM-3B protein.
Length = 158
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 185 VDLRVVILDDLSDGRDSVLGGVDVLDGSRLRVGDERGE-QRHGASARARKLYAAEL 21
VDL+V L D+ +V G + +LDG ER E + H AS R ++ +
Sbjct: 13 VDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFNTRFVFCCRI 68
>AY221634-1|AAO66457.1| 305|Caenorhabditis elegans SYM-3A protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 185 VDLRVVILDDLSDGRDSVLGGVDVLDGSRLRVGDERGE-QRHGASARARKLYAAEL 21
VDL+V L D+ +V G + +LDG ER E + H AS R ++ +
Sbjct: 13 VDLQVCQLSDVPLVNATVFGKMRLLDGGSFEEATERVEVKNHSASFNTRFVFCCRI 68
>AF125965-2|AAL38961.1| 366|Caenorhabditis elegans Hypothetical
protein H43I07.2 protein.
Length = 366
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 84 ISHPESRSVENINATENAISAVAKIIKYNHSQINRDEIIRHWLTWLPVTED 236
I P + ++ + E A+ KI Y ++ + +DE++ H L LP+ D
Sbjct: 75 IEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD 125
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -2
Query: 409 TSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEYTCGASSVSS 230
T +T+ + +S G+ S T AS V+ ++ ++ S S + GAS+VS
Sbjct: 640 TGSTVTEASTIS-GSTESSTIPGSTESTVSEASTVSGSSVSTVSGSTEST-SAGASTVSG 697
Query: 229 VTGSHVNQCLMIS 191
TGS V+ IS
Sbjct: 698 STGSTVSDSSTIS 710
>AF067609-9|AAP82661.1| 278|Caenorhabditis elegans Hypothetical
protein C23H5.2 protein.
Length = 278
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = -2
Query: 409 TSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEYTCGA----S 242
TS++ + S+GT R+N+ + + GA+A + L + +N+ Y G+ S
Sbjct: 181 TSSSPISQESCSLGTGLRKNSRQLMFLAVPGAAAATMSQSLTLPAINNNNYRKGSDSRLS 240
Query: 241 SVSSVTGSHVNQCL 200
+VS+++ + V+ +
Sbjct: 241 TVSALSATSVSPAI 254
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 27.1 bits (57), Expect = 7.8
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -2
Query: 436 SSALPCICRTSATICAYAGLSVGTASRRNASASVAMTWRGASAVASAACPLLASSHNSEY 257
SS P +T + + S AS + +T SA+ S + PLLASS
Sbjct: 291 SSNPPSTSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALTSTS-PLLASSTERTA 349
Query: 256 TCGASSVSSVTGSH 215
T SSVS+ H
Sbjct: 350 TTATSSVSTPKHPH 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,102
Number of Sequences: 27780
Number of extensions: 172977
Number of successful extensions: 703
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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