Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_E03
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 27 2.6
11_04_0221 + 15021145-15022497 27 3.5
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119... 26 6.0
03_05_0424 + 24107009-24107138,24107381-24107784 26 6.0
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 26 6.0
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 25 8.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 25 8.0
02_02_0503 + 11008475-11008793,11009983-11010140,11011863-110121... 25 8.0
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342... 25 8.0
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 266 YFRALHVRASPTLARSSSLRAPLPIV 189
Y + L +R +P R SLR PLP++
Sbjct: 548 YLKTLLLRKTPRCKRPRSLRRPLPVL 573
>11_04_0221 + 15021145-15022497
Length = 450
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 224 VPVWDSPGREAPGNTH*NPP 283
V WDSP R+AP T PP
Sbjct: 327 VAEWDSPARDAPRTTPPPPP 346
>11_01_0144 +
1187532-1187813,1188913-1189454,1189621-1189707,
1190151-1190260,1190346-1190464,1190548-1190634,
1191554-1191853
Length = 508
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 171 ETGVPQYNR*GGTEGRAPCQCGTRPDVKRPEIPTKTPRGRP 293
ET VP+ GG + + TRP KRP++ + P
Sbjct: 444 ETPVPRITFLGGPRTLSTARKSTRPPGKRPKLDPEVTTSEP 484
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 219 APCQCGTRPDVKRPEIPTKTPRGRP 293
+P QC R + PE T TP RP
Sbjct: 121 SPTQCRHRRPSRPPETTTATPSSRP 145
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 285 PGGF*WVFPGASRPGESHTGTELVPPCPLTYC 190
PG F FP A G SH G + L++C
Sbjct: 354 PGEFVVTFPRAYHVGFSHEGLRITAKVKLSWC 385
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 166 LVRPESP--NTIGKGARRDELRASVGLART*SARKYPLKPP 282
L+RP+ + IG G R+ +R+S+ + Y KPP
Sbjct: 802 LIRPDLSCGSVIGNGMSRENIRSSISARADLISPPYKSKPP 842
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 179 SPPIQ*VRGHGGTSSVPVWDSPGREAPGNTH*NPPGP 289
+PP RGHGG P PG AP P GP
Sbjct: 1183 APPPPPPRGHGGVGGPPT--PPGAPAPPMPPGVPGGP 1217
>02_02_0503 +
11008475-11008793,11009983-11010140,11011863-11012102,
11013502-11013757,11013846-11014057,11014413-11014453,
11014531-11014567
Length = 420
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -2
Query: 262 SGRFTSGRVPHWHGAR----PSVPPYL 194
+GRF++GR+P + A P VPPYL
Sbjct: 93 TGRFSNGRIPVDYIAEKLGLPFVPPYL 119
>01_01_0463 -
3424951-3425065,3425191-3425258,3425362-3425586,
3425669-3425804,3425905-3426107,3426227-3426340,
3426432-3426506,3426625-3426783,3426868-3427038,
3427227-3427274,3427366-3427491,3427611-3427718,
3427800-3427913,3428320-3428496
Length = 612
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 157 VRVVRKCISPRQKKRKKKGAMSYAMD 80
+R + C + Q++++K+GA + AMD
Sbjct: 150 LRRIASCFTSEQREKRKRGADNDAMD 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,654,011
Number of Sequences: 37544
Number of extensions: 214242
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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