Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E03
         (296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z74475-3|CAA98957.2|  567|Caenorhabditis elegans Hypothetical
           protein R04F11.4 protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 247 SGRVP--HWHGARPSVPPYLLYW 185
           +GR P  +W G RP VPP + Y+
Sbjct: 481 NGRQPDLNWIGGRPYVPPDIYYF 503


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 64  FFICCNYYTHYAIIIVI 14
           FF+CC YY +++  I +
Sbjct: 230 FFLCCLYYIYFSTTITL 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,510
Number of Sequences: 27780
Number of extensions: 165056
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)