Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_E02
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    26   3.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   7.3  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   9.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.6  

>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 350 GEQSRYGHVSLDEYWHCPFNATFNYMSK 433
           G Q+R+G V++D+  HC F    N++ +
Sbjct: 249 GRQNRWGVVNVDDENHCEFVFLRNFLMR 276


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 417 LTTCRRLPMDAPAQHADDSIEPLDVPQCSTGPQRT 521
           L +  RLP D P    DD+I  L     S  PQ T
Sbjct: 248 LISVPRLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 541 CSVPCLAVRWGPVLHWGT 488
           C  P    RWG  LHW +
Sbjct: 515 CKDPLFYSRWGACLHWSS 532


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 210 ELNYFLAYQYCRSLGLQLASFETKEKADSITTYLTNAGYNK 332
           ++ Y+  Y Y    G  L   +   K  ++TT+ TN G NK
Sbjct: 211 QMFYYTTYFYEMMSGSALRPIDLVSK--NLTTFCTNVGVNK 249


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 433  GCQWTLQLSTLTTASNLWMCPNAVLAPNAQLDTERS 540
            GC WT   + L T      C N ++  N+Q  +E S
Sbjct: 953  GCTWTSLSTRLGTLKEKGFCFNNLIVMNSQNISESS 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,290
Number of Sequences: 5004
Number of extensions: 42682
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)