Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D24
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...   230   1e-61
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...   216   2e-57
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.0  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    26   5.2  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.9  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   6.9  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   9.1  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
            Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score =  230 bits (562), Expect = 1e-61
 Identities = 115/185 (62%), Positives = 137/185 (74%), Gaps = 1/185 (0%)
 Frame = +2

Query: 14   FSLYPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFGGPPE 193
            F+LYPQFMY+LRRS FLQVFNNSPDET FYRHML  ED+  SLIMIQP L S+SF  P  
Sbjct: 568  FTLYPQFMYYLRRSPFLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSFEHPGG 627

Query: 194  -PVLLDTSSIQPDRILLMDTFFQILIYHGETIAQWRALRYQDMAEYESFAQLLRAPIDDA 370
             PVLLD  S++PD ILL+DTFF ILI+HG+TIAQWR   YQ+  EY++  +LL AP  +A
Sbjct: 628  VPVLLDAVSVKPDVILLLDTFFHILIFHGDTIAQWRNAGYQNQPEYQNLKELLEAPRVEA 687

Query: 371  QEILQSRFPVPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAYGGAMPIPSADGGAPVLTD 550
             E+L  RFP+PR+I  + GGSQARFLLS++NPS+THN    YG     P A     +LTD
Sbjct: 688  AELLIDRFPIPRFIVCDQGGSQARFLLSRLNPSETHNTTSMYGA----PPAHA---ILTD 740

Query: 551  DVSLQ 565
            DVSLQ
Sbjct: 741  DVSLQ 745


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score =  216 bits (528), Expect = 2e-57
 Identities = 107/186 (57%), Positives = 132/186 (70%), Gaps = 1/186 (0%)
 Frame = +2

Query: 11   NFSLYPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFGGPP 190
            NF+LYPQF++HLRRS FL +FNNSPDET+FYRHML   D+  SLIMIQP L SYSF  P 
Sbjct: 572  NFTLYPQFIFHLRRSPFLHIFNNSPDETSFYRHMLNVADVNDSLIMIQPTLQSYSFNEPE 631

Query: 191  E-PVLLDTSSIQPDRILLMDTFFQILIYHGETIAQWRALRYQDMAEYESFAQLLRAPIDD 367
              PVLLD+ SI+PD ILL+DT+F ILI+HG TIAQWR   YQ+  EY +  +LL AP  +
Sbjct: 632  GVPVLLDSVSIKPDVILLLDTYFHILIFHGSTIAQWRNAGYQEQPEYVNLKELLLAPRLE 691

Query: 368  AQEILQSRFPVPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAYGGAMPIPSADGGAPVLT 547
              E+L  RFP+PR+I  + GGSQARFLLS++NPS + N    +      P +     VLT
Sbjct: 692  VTELLADRFPIPRFIVCDQGGSQARFLLSRINPSVSFNKSSQFS-----PMSKDSETVLT 746

Query: 548  DDVSLQ 565
            DDV+LQ
Sbjct: 747  DDVNLQ 752


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 176 FGGPPEPVLLDTSSIQPDRIL 238
           FG P  P  ++ SS+ PDRIL
Sbjct: 157 FGLPETPKTIEESSLDPDRIL 177


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +2

Query: 32  FMYHLRRSQF----LQVFNNSPDETTFYRHMLM 118
           F Y + RS++      +F+N P E++FYR+ ++
Sbjct: 199 FQYFINRSKWHMKQSNIFSNVPHESSFYRNSII 231


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 311 QDMAEYESFAQLLRAPIDDAQEILQSRFPVP 403
           +D   + +F+Q+L A + D+   L   FP P
Sbjct: 195 RDYVNFSNFSQMLSAQLCDSMAFLIQIFPTP 225


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +2

Query: 425 GGSQARFLLSKVNPSQTHNNMY--AYGGAMPIPSADGGAPVLTDDVSLQGVYGTSEEAGS 598
           GG       S  +P+     ++  A+ G   +    GG   + DD+ + G +GT    G 
Sbjct: 108 GGPGGAQFFSASDPNDIFERVFGHAFAGGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGG 167

Query: 599 L 601
           +
Sbjct: 168 M 168


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 421 TWWFTGSVPFIQGQPIAN 474
           +WW  GS P + G P A+
Sbjct: 481 SWWTVGSQPAVNGAPSAD 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,843
Number of Sequences: 5004
Number of extensions: 60505
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)