Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D24
(633 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 2.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 2.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 2.5
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 7.5
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 7.5
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 7.5
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 7.5
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 7.5
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 21 7.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.5
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 7.5
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 9.9
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.0 bits (47), Expect = 2.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 212 SSIQPDRILLMDTFFQILIYHGETIAQWRALRYQDMAEYESFAQLLR 352
SSI D I L+ FQ + + RALR +A+ S +LLR
Sbjct: 175 SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLR 221
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.0 bits (47), Expect = 2.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 212 SSIQPDRILLMDTFFQILIYHGETIAQWRALRYQDMAEYESFAQLLR 352
SSI D I L+ FQ + + RALR +A+ S +LLR
Sbjct: 175 SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLR 221
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.0 bits (47), Expect = 2.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 212 SSIQPDRILLMDTFFQILIYHGETIAQWRALRYQDMAEYESFAQLLR 352
SSI D I L+ FQ + + RALR +A+ S +LLR
Sbjct: 175 SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLR 221
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 416 TEHGGSQARFLLSKVNPSQTHNNMYAY 496
TE S+ ++S ++ + HNN Y Y
Sbjct: 70 TERERSREPKIISSLSNNTIHNNNYKY 96
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 416 TEHGGSQARFLLSKVNPSQTHNNMYAY 496
TE S+ ++S ++ + HNN Y Y
Sbjct: 71 TERERSREPKIISSLSNNTIHNNNYKY 97
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 416 TEHGGSQARFLLSKVNPSQTHNNMYAY 496
TE S+ ++S ++ + HNN Y Y
Sbjct: 71 TERERSREPKIISSLSNNTIHNNNYKY 97
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 416 TEHGGSQARFLLSKVNPSQTHNNMYAY 496
TE S+ ++S ++ + HNN Y Y
Sbjct: 71 TERERSREPKIISSLSNNTIHNNNYKY 97
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 416 TEHGGSQARFLLSKVNPSQTHNNMYAY 496
TE S+ ++S ++ + HNN Y Y
Sbjct: 71 TERERSREPKIISSLSNNTIHNNNYKY 97
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 14 FSLYPQFMYHLRRSQFLQVFNNSPDET 94
F + P ++ RS QVFN D+T
Sbjct: 30 FDIPPDYLPDRYRSVATQVFNRFGDDT 56
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 558 DTSSVNTGAPPSADGIGIAPPYAYIL 481
D + N G PP A +A P IL
Sbjct: 89 DITLKNAGTPPEAVSYNVAVPTKSIL 114
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1
Query: 558 DTSSVNTGAPPSADGIGIAPPYAYIL 481
D + N G PP A +A P IL
Sbjct: 89 DITLKNAGTPPEAVSYNVAVPTKSIL 114
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 219 IEDVSSSTGSGG 184
+ DV SST SGG
Sbjct: 250 VSDVESSTSSGG 261
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,334
Number of Sequences: 438
Number of extensions: 4567
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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