Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D23
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    30   0.18 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   1.7  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   3.9  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   6.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   6.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   6.8  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    24   9.0  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.9 bits (64), Expect = 0.18
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 287 FDGLEVVSPHEFEIVIY-LNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLW 439
           F  LE ++  +F ++I  L + G+L+   +  LP   +LKLS  +    S+W
Sbjct: 26  FSFLEALTQEDFPVLIRALKRFGILDGFPNTRLPNEMILKLSSVQGEDASVW 77


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 421 FPTVAELQDGAARQRTVIDK----VQHTHLI*IDDNFELVRRDDLEPIETP 281
           F  +  L D +    T I+K    V H     I  N +L+R DDLEP + P
Sbjct: 436 FLPIEILNDESVIAETSIEKEETNVTHLEKPVISKNDDLIRGDDLEPYDFP 486


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 152 ERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLSD 274
           ER A+ K +I +TI E+ ++ QD+   V+ QEP     ++D
Sbjct: 186 ERHADIK-RIERTIAELAQLFQDMATMVQEQEPMVDKIVTD 225


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 179 SAPSCWRLSRCNTYSSGRLVSIGLPSSR 96
           SAPS   + R NT S  R +S+ LPSS+
Sbjct: 43  SAPSTPAIRRNNTDSFERGLSLPLPSSK 70


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 200 VCRIVQDVLKEVELQEPRFI---SSLSDYNGRFDGL 298
           VC I  +VLK+  L  PR+I   ++ +D   R++GL
Sbjct: 393 VCLISIEVLKQAFLHVPRWIEVYATSNDRKRRYEGL 428


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/68 (20%), Positives = 33/68 (48%)
 Frame = +2

Query: 98  EMMAAQSKLVYQMNKYYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLSDY 277
           + +  +++ V Q  +   E +++ +  +TK  +E     Q   +E+   EP  ++  S +
Sbjct: 590 QYLETENEEVLQKYENLQEELSSTRKLLTK--NEAAVAEQQSNEEMHSNEPNILNLYSVF 647

Query: 278 NGRFDGLE 301
            G+ D L+
Sbjct: 648 EGKVDSLQ 655


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 301 LEPIETPIVVRQRRYEPRLLKLDLFEDILNYPANFMYGFCDL 176
           ++P  TP++ ++   E +LLK    E+I++    F+  F D+
Sbjct: 52  MKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPFEDI 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,026
Number of Sequences: 5004
Number of extensions: 33153
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)