Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D23
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869     32   0.18 
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    29   1.7  
06_02_0262 + 13563082-13563633                                         29   2.2  
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910...    27   5.1  

>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
          Length = 664

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 74  IATMLVPPEMMAAQSKLVYQMNKYYNERVANRKAQITKTIHEVCRIVQDVLKEVELQ 244
           +A  L+PP   AA S +  +  K    R    KAQI +  +++CR V+  L    LQ
Sbjct: 419 LAAALLPPTPSAAVSPMQRKPTKPRRRRQLKLKAQIIRDQNKICRKVKAALDRYALQ 475


>08_02_0864 +
           21994286-21994989,21996257-21996958,21997221-21997374,
           21997494-21997838,21998323-21999240,21999312-21999640,
           21999709-21999832,21999901-22000071,22000188-22001648,
           22002647-22002910,22003866-22004189
          Length = 1831

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 2   HEGTAWCARACNATAVPCAPRDAA 73
           H G  +CAR C A +VP AP DAA
Sbjct: 88  HCGRVFCAR-CTANSVPRAPGDAA 110


>06_02_0262 + 13563082-13563633
          Length = 183

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 232 GRASGAEVHIFAVGLQWAFRWARGRLAA 315
           G  SG  VH  AVG++ A++W  GR  A
Sbjct: 80  GAGSGDGVHASAVGVRGAWQWGGGRREA 107


>03_06_0613 -
           35090377-35090478,35090686-35090839,35090925-35091004,
           35091191-35091340,35091920-35092045,35096500-35096916
          Length = 342

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 2   HEGTAWCARACNATAVPCAPRDAAIATMLVPPEMMA 109
           H G    A   ++ +   AP  AA +T+L+PP ++A
Sbjct: 29  HHGGGGAAVGSSSASSSPAPAPAAASTLLLPPRLLA 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,407
Number of Sequences: 37544
Number of extensions: 246964
Number of successful extensions: 759
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)