Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D23
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46242-5|CAA86330.2| 364|Caenorhabditis elegans Hypothetical pr... 160 4e-40
U19861-1|AAA97554.2| 364|Caenorhabditis elegans mab-21 protein ... 160 4e-40
U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z82096-1|CAB05030.2| 229|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical pr... 27 8.0
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 8.0
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 8.0
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 8.0
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 8.0
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 8.0
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 8.0
>Z46242-5|CAA86330.2| 364|Caenorhabditis elegans Hypothetical
protein F35G12.6 protein.
Length = 364
Score = 160 bits (389), Expect = 4e-40
Identities = 71/114 (62%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Frame = +2
Query: 101 MMAAQSKLVYQMNKYYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLSDYN 280
M+ +VYQ+N Y+NE+V +RK ++TKT+ + ++VQ++LKEVE QEPRFI++LS+
Sbjct: 1 MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSETT 60
Query: 281 -GRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLW 439
GRFDG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMSLW
Sbjct: 61 TGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMSLW 114
>U19861-1|AAA97554.2| 364|Caenorhabditis elegans mab-21 protein
protein.
Length = 364
Score = 160 bits (389), Expect = 4e-40
Identities = 71/114 (62%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Frame = +2
Query: 101 MMAAQSKLVYQMNKYYNERVANRKAQITKTIHEVCRIVQDVLKEVELQEPRFISSLSDYN 280
M+ +VYQ+N Y+NE+V +RK ++TKT+ + ++VQ++LKEVE QEPRFI++LS+
Sbjct: 1 MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEVEAQEPRFINTLSETT 60
Query: 281 -GRFDGLEVVSPHEFEIVIYLNQMGVLNFVDDGSLPGCAVLKLSDGRKRSMSLW 439
GRFDG+ V SP E+E V+YLNQMGV NFVDDG++ GCAVLKLSDGRKRSMSLW
Sbjct: 61 TGRFDGIVVHSPSEYEAVLYLNQMGVFNFVDDGTIQGCAVLKLSDGRKRSMSLW 114
>U37548-4|AAA79200.2| 373|Caenorhabditis elegans Hypothetical
protein C54D2.1 protein.
Length = 373
Score = 31.1 bits (67), Expect = 0.37
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 8 GTAWCARACNATAVPCAPRDAAIATMLVPPEMMAAQSKLVYQMNKYYNERVANRKAQITK 187
GT CA+A + + C P A+ A + ++ A + VYQ YY + V A
Sbjct: 52 GTCQCAQAYHPSGTQCLPSAASAAAVNGVYQVPAGAVRPVYQPVVYYPQVVRTPIACALP 111
Query: 188 TIHEV 202
HEV
Sbjct: 112 PCHEV 116
>Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical
protein K08F9.1 protein.
Length = 490
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +2
Query: 218 DVLKEVELQEPRFISSLSDYNGRFDGLEVVSPHEFEIVI 334
DV+++ L++ F+ ++ + F G+ V+S FEI++
Sbjct: 258 DVIQQKSLRDKAFVGAVVTFVMSFSGVAVISAFAFEILV 296
>Z82096-1|CAB05030.2| 229|Caenorhabditis elegans Hypothetical
protein ZK909.3 protein.
Length = 229
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 113 QSKLVYQMNKYYNERVANRKAQI---TKTIHEVCRIVQDVLKEVE 238
Q+KLV+ +K YN R RKA I K ++E + ++V+ E++
Sbjct: 166 QAKLVHLADKLYNLRDLERKAPIGWDKKRVNEYFKWSREVIGEMK 210
>Z48006-1|CAA88047.1| 642|Caenorhabditis elegans Hypothetical
protein F19C6.1 protein.
Length = 642
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 142 LIHLVD*FRLGCHHLGRHEHGS 77
L+H FRLGC +GR E G+
Sbjct: 440 LLHKEPGFRLGCRRVGRPEDGA 461
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 223 DILNYPANFMYGFCDLRLPVGDSLVV 146
D L YP F D R+PVGD + +
Sbjct: 5271 DDLRYPPRFNVPLWDRRIPVGDPMFI 5296
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 223 DILNYPANFMYGFCDLRLPVGDSLVV 146
D L YP F D R+PVGD + +
Sbjct: 4631 DDLRYPPRFNVPLWDRRIPVGDPMFI 4656
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 223 DILNYPANFMYGFCDLRLPVGDSLVV 146
D L YP F D R+PVGD + +
Sbjct: 5271 DDLRYPPRFNVPLWDRRIPVGDPMFI 5296
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 223 DILNYPANFMYGFCDLRLPVGDSLVV 146
D L YP F D R+PVGD + +
Sbjct: 5271 DDLRYPPRFNVPLWDRRIPVGDPMFI 5296
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 223 DILNYPANFMYGFCDLRLPVGDSLVV 146
D L YP F D R+PVGD + +
Sbjct: 4631 DDLRYPPRFNVPLWDRRIPVGDPMFI 4656
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 223 DILNYPANFMYGFCDLRLPVGDSLVV 146
D L YP F D R+PVGD + +
Sbjct: 5271 DDLRYPPRFNVPLWDRRIPVGDPMFI 5296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,800,090
Number of Sequences: 27780
Number of extensions: 192944
Number of successful extensions: 556
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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