Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D21
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 35 0.009
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 32 0.084
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.34
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 29 0.59
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 28 1.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.4
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 4.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 7.3
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 7.3
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 7.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 7.3
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 9.7
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 9.7
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +1
Query: 250 RQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVRRFQRELE 429
RQLK C+ Q+N+ LQ ++ SQK + ++QL+ Q ++Q+ RV+ Q EL
Sbjct: 71 RQLKR---NCDLYQRNLQKLQLLFKQQSQKNTLLEKQLSLQTELNQEKDKRVKILQDELW 127
Query: 430 AAE 438
A +
Sbjct: 128 ALQ 130
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.9 bits (69), Expect = 0.084
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +1
Query: 232 ILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVRR 411
I ++K+R + E+ + + + N+S L ++++ K+ + E Q +RR
Sbjct: 539 ITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDLRR 598
Query: 412 FQRELEAAEDRADTAESNL 468
F + +DR SNL
Sbjct: 599 FHESINKLQDREKELTSNL 617
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/80 (18%), Positives = 42/80 (52%)
Frame = +1
Query: 229 KILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVR 408
K+ + ER++++ E++++ISL ++ +EK + ++ + ++ + R++
Sbjct: 571 KLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQ 630
Query: 409 RFQRELEAAEDRADTAESNL 468
+ E A++ + + SNL
Sbjct: 631 TLEEENNKAKEDSTSKTSNL 650
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/78 (23%), Positives = 34/78 (43%)
Frame = +1
Query: 226 IKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRV 405
+K+L+ E++LKE + + KNI L S+ VN LT ++Q
Sbjct: 890 LKLLQASEKRLKEQVEERNSLIKNIVTRFTQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
Query: 406 RRFQRELEAAEDRADTAE 459
R + ++ + + + E
Sbjct: 950 RELDKSIQEFKRKCQSME 967
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 229 KILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKV--NIYKRQLTEQEGVSQQSVTR 402
K L+KK + + VII+C ED L+ D+ E ++ V NI + + E++G +QS
Sbjct: 54 KKLKKKPKHIA-VIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLKQSPEA 112
Query: 403 VRR 411
V +
Sbjct: 113 VEK 115
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 220 ETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQ 372
E K +RKK + I EE++ + ++ +D+ E+ S + + +R LT++
Sbjct: 122 EKFKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERKSMQGELKERNLTDK 172
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.4
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Frame = +1
Query: 247 ERQLKEVIIQCEEDQKNISLLQDS---------LEKTSQ----KVNIYKRQLTEQEGVSQ 387
ER++K V+ + +E I L++ L++TSQ + KR T + + +
Sbjct: 1018 EREVKNVVEKFDEVNDQIELMRSDVLLRKVRPGLDQTSQLNEESAYLEKRIQTLERSLEE 1077
Query: 388 QSVTRVRRFQRELEAAEDRADTAESNLSLIRAKHRTFVTTSTVPGSQVYLVQESRALSS 564
+ ++++REL A + +S+ LI R STV S V + E +A SS
Sbjct: 1078 VTPIWKKQWERELNAIVQEQEFLDSHTVLISDLKRDLSALSTVL-SNVSAIAELQAKSS 1135
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 241 KKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQ-QSVTRVRRFQ 417
++ + + Q EED KN+ + L + V +++ L E+ +S Q + R F
Sbjct: 34 RRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFM 93
Query: 418 RELE 429
LE
Sbjct: 94 ENLE 97
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 241 KKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQ---QSVTRVRR 411
+ E + K + +E Q + + L ++ N + RQL EQE Q + +T +R+
Sbjct: 464 ESEAERKRLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRK 523
Query: 412 FQRE 423
RE
Sbjct: 524 LLRE 527
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 81 RGSKLRISLSAGRSGSYALWVAAHHKQLEALEGHGTRIG 197
RG+ L + +GS +W AA K+ + GH R+G
Sbjct: 302 RGTHLAVGT---HNGSVEIWDAATCKKTRTMSGHTERVG 337
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 420 ALESSNSCHTLLGYTLLFGQLPLVDVDFLGSF 325
A+E N+C L +LF + +V +D LGSF
Sbjct: 1440 AVEFINACEILDLNLVLFNAVSMVFIDALGSF 1471
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 259 KEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVRRFQ 417
KE+ + EE+ N+ ++DS + +S K N ++ + EG+ R F+
Sbjct: 236 KELAGESEEEGSNVDDVEDSGDSSSDK-NSINHEIRDNEGLEDTVFVRNLLFE 287
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 185 NSNWMRKREDMLKPSR 232
N NWM RE ++K SR
Sbjct: 312 NKNWMHAREGLMKSSR 327
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/90 (21%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = +1
Query: 223 TIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKV--NIYKRQLTEQEGVSQQSV 396
T KILR KE+ L + ++ +E+ IS ++ + T +K+ I + ++ +E S++S
Sbjct: 314 TEKILRFKEKILDLLEMKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEYESEKSY 373
Query: 397 TRVRRFQRELEAAEDRADTAESNLSLIRAK 486
+ + ++ ++ + + + + ++R K
Sbjct: 374 SE-KEYEEKISSLRIELEDKLAEIDMLRNK 402
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 95 KNISIRWKKWKLRLVXXXXXXXXXXXXRTWNSNWMRKREDMLKPSRSCARRNVSS 259
KN++ +WK++ L V ++ N R+ P RS RR +S+
Sbjct: 269 KNVNRQWKQYILTSVSNMDKGNPSGGSQSTNVTTFRRFSQSSYPRRSNYRRRIST 323
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 220 ETIKILRKKERQLKEVIIQCEEDQKNISLLQDSLEK-TSQKVNIYKRQLTEQE 375
E ++ R+KERQ +E + E +K + LEK +++ + ++Q ++E
Sbjct: 94 EAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEE 146
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 337 KVNIYKRQLTEQEGVSQQSVTRVRRFQRELEAAEDRADTAESNLSLIRAK--HRTFVTTS 510
K + K + + ++ Q++ R ++ LE+ D +S+LS+I+A+ +R F+T +
Sbjct: 556 KEKLEKLKASTSSFIALQAIVRAFLLRKNLESIYDSFQ--KSHLSVIKAQSLYRGFITRT 613
Query: 511 TVPGSQVYLVQ 543
+ YL++
Sbjct: 614 KIDYCNDYLLK 624
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 474 DTCQAPHFRHHLHRPWL 524
D+C RH LH PWL
Sbjct: 829 DSCIEVRTRHRLHIPWL 845
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 238 RKKERQLKEVIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQL 363
++K+ +LK VII + ++K L DS+ + Y+R L
Sbjct: 851 KRKDSKLKHVIINEKRNKKAAKLTADSVPFPFESREQYERSL 892
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 96 RISLSAGRS-GSYALWVAAHHKQLEALEGHGTRIG 197
+++L+ G + + LW A+ L LEGH R+G
Sbjct: 235 QLTLATGAADNTVCLWKASQSTPLLRLEGHLARVG 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,328
Number of Sequences: 5004
Number of extensions: 52214
Number of successful extensions: 209
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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