Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D21
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   4.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HVSKRGCSQQYRRGLPQLPVRV 416
           H +  GC+ + R+  P  P+RV
Sbjct: 437 HTTTNGCTAELRKKEPPHPIRV 458


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HVSKRGCSQQYRRGLPQLPVRV 416
           H +  GC+ + R+  P  P+RV
Sbjct: 423 HTTTNGCTAELRKKEPPHPIRV 444


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HVSKRGCSQQYRRGLPQLPVRV 416
           H +  GC+ + R+  P  P+RV
Sbjct: 457 HTTTNGCTAELRKKEPPHPIRV 478


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 481 HVSKRGCSQQYRRGLPQLPVRV 416
           H +  GC+ + R+  P  P+RV
Sbjct: 406 HTTTNGCTAELRKKEPPHPIRV 427


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 414  ESSNSCHTLLGYTLLFGQLPLVDVDFLGSFLQG 316
            + S   H L G TLL  Q+ LV    + S L G
Sbjct: 1007 QQSPQQHVLPGKTLLASQIKLVSPGQIKSLLTG 1039


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 310 QDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVRRFQRELEAAEDRADTAESNLSLIRAKH 489
           Q+S    S+   I+KR L   +GV  +  + +   + EL   ED    A      +R K 
Sbjct: 41  QNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNEL-FPEDINKRAPMGFQGMRGKK 99

Query: 490 RTF 498
            +F
Sbjct: 100 ASF 102


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 310 QDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVRRFQRELEAAEDRADTAESNLSLIRAKH 489
           Q+S    S+   I+KR L   +GV  +  + +   + EL   ED    A      +R K 
Sbjct: 41  QNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNEL-FPEDINKRAPMGFQGMRGKK 99

Query: 490 RTF 498
            +F
Sbjct: 100 ASF 102


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 310 QDSLEKTSQKVNIYKRQLTEQEGVSQQSVTRVRRFQRELEAAEDRADTAESNLSLIRAKH 489
           Q+S    S+   I+KR L   +GV  +  + +   + EL   ED    A      +R K 
Sbjct: 41  QNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNEL-FPEDINKRAPMGFQGMRGKK 99

Query: 490 RTF 498
            +F
Sbjct: 100 ASF 102


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 550 ETPGPGRPGSQ 518
           E PGPG PG +
Sbjct: 24  EEPGPGLPGQE 34


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 550 ETPGPGRPGSQ 518
           E PGPG PG +
Sbjct: 24  EEPGPGLPGQE 34


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 550 ETPGPGRPGSQ 518
           E PGPG PG +
Sbjct: 24  EEPGPGLPGQE 34


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 265 VIIQCEEDQKNISLLQDSLEKTSQKVNIYKRQLTEQEGVSQQS 393
           VII+C+E   N    Q  L+  +  V  YK ++  +  +S  S
Sbjct: 710 VIIECQEPVTNRPTGQLLLDYLTDTVLAYKPKILGKPTISPDS 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,800
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)