Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D20
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   4.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    24   5.6  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    24   7.5  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   9.8  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   9.8  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    23   9.8  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 74  SPACAAPHRTAPHHDTLSSPST 139
           SP   +P   +PHH  + SPS+
Sbjct: 63  SPGYISPSSQSPHHGPVRSPSS 84


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 51  SADLASGRPQPAPRHTAPHRITTR 122
           + DL +    P PRHT P   TT+
Sbjct: 330 AVDLTTPSSPPIPRHTKPKLSTTQ 353


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 163 SIKCRYSFCGRFVRARCGVM 222
           S+ C    CG ++R +C +M
Sbjct: 379 SLFCGLPICGGYLRTKCNIM 398


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 90  RHTAPHRITTRCLRPRQ*CEMHFVIDKVSIFVLR 191
           + + PH + T C++ +  C  H  I     F+L+
Sbjct: 106 KKSKPH-LQTHCIKRKTYCVKHLAISNFQSFILQ 138


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 85  AGWGRPLAKSALIRALNLHLYTLHI 11
           +G+ RPL     + A  L L TLH+
Sbjct: 150 SGYFRPLLMDGAVHATKLDLPTLHL 174


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 23  IEM*IKRADERRLSERPSPACAAPHRTAPHHDTLSS 130
           IE  IK+ +ER+LSE+ S +  A +  A + D + S
Sbjct: 367 IEKSIKKMEERKLSEK-SESKTAVNENATYKDPVLS 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,325
Number of Sequences: 5004
Number of extensions: 19945
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)