Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D20
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532 31 0.24
01_01_1055 + 8342761-8342822,8343374-8343791,8343867-8344096,834... 31 0.24
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030... 29 1.3
07_03_0570 - 19601264-19601779 27 3.9
02_02_0715 + 13230576-13230848 27 3.9
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167 27 5.1
01_06_1454 + 37498513-37499154 27 5.1
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 26 6.7
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803... 26 6.7
03_05_1127 + 30587488-30588291 26 6.7
03_04_0024 + 16556026-16556588,16556757-16556868 26 6.7
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 26 6.7
09_06_0081 + 20745627-20748144,20748211-20748308 26 8.9
05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492 26 8.9
05_03_0103 + 8422250-8422813 26 8.9
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 26 8.9
02_01_0587 - 4341772-4342164 26 8.9
>06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532
Length = 101
Score = 31.1 bits (67), Expect = 0.24
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 223 RRGTVLCSGDEARAATRGGEC 285
R+G +L GDEA+A T+ GEC
Sbjct: 10 RKGVILRKGDEAQARTKKGEC 30
>01_01_1055 +
8342761-8342822,8343374-8343791,8343867-8344096,
8344136-8344324,8344458-8344555,8344588-8344742
Length = 383
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 33 RLSARMSADLASGRPQPAPRHTAPHRITTRCLRPR 137
R++ M A LA P PAP P +T RCLRPR
Sbjct: 52 RITHPMRAKLAVPVPSPAPPR--PPSVTFRCLRPR 84
>01_06_1743 +
39601644-39602023,39602301-39602734,39602828-39603006,
39603636-39603716,39603828-39603914,39604000-39604006,
39604241-39604312,39604712-39604792,39605156-39605262
Length = 475
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 322 KEREPGGLGDEIDTRRRASPHAPR 251
+ R+PGG+GDEI R S PR
Sbjct: 127 RHRQPGGIGDEILQRASISSSPPR 150
>07_03_0570 - 19601264-19601779
Length = 171
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 231 AAPHHTAPRPNKPTAKRISTL 169
A PHH++PR ++P + R S L
Sbjct: 2 ALPHHSSPRSSRPISHRRSEL 22
>02_02_0715 + 13230576-13230848
Length = 90
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 325 GKEREPGGLGDEIDTRRRA 269
G E E G+GDE++TRR A
Sbjct: 49 GVESEKDGVGDELETRRMA 67
>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
Length = 422
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = +1
Query: 73 VPSLRRATPHRTASRHAVFALDSDAKCTLLSIKCRY-----SFCGRFVRARCGVMRRGTV 237
+PS R H S D + C ++ I CR G V+AR GV R GT+
Sbjct: 167 LPSPRLMCTHMPLSLLPATVADGSSGCKIIYI-CRRMDPDDDVQGGDVQARQGVQRHGTL 225
Query: 238 LCS 246
CS
Sbjct: 226 RCS 228
>01_06_1454 + 37498513-37499154
Length = 213
Score = 26.6 bits (56), Expect = 5.1
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 319 EREPGGLGDEIDTRRRASPHAPRLRCTIQCRAASHRTAP*QTDRKTNIDTLSITKCISHH 140
+ PG GDE R A + I + + DR + C+S
Sbjct: 93 QEPPGDHGDEAAAERCARVARKKPGRAIAEKIPAIVCPAGGLDRLAGCGSTECAICLSEF 152
Query: 139 CRGRRQRVVMRCG 101
+G R RV+ RCG
Sbjct: 153 AQGHRVRVLPRCG 165
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 44 ADERRLSERPSPACAAPHRTAP 109
AD+R + PSPA AAP AP
Sbjct: 66 ADKRLRAVAPSPAAAAPRPPAP 87
>04_01_0611 -
8029101-8029205,8029985-8030107,8030191-8030556,
8030639-8031124
Length = 359
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 RCRLSARMSADLASGRPQPAP 89
RCR+ + +SG P+PAP
Sbjct: 79 RCRMEEEEEEESSSGEPEPAP 99
>03_05_1127 + 30587488-30588291
Length = 267
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 205 ARCGVMRRGTVLCSGDEARAATRGGECR 288
A GV RGT LC + A RGG R
Sbjct: 129 AMFGVNARGTFLCCREAANRLARGGRGR 156
>03_04_0024 + 16556026-16556588,16556757-16556868
Length = 224
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 41 RADERRLSERPSPACAAPHRTAP 109
R RR S RPSP C P P
Sbjct: 110 RVARRRQSRRPSPCCPPPFSLPP 132
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 238 LCSGDEARAATRGGECRSR 294
L +GD A ++RGG CR R
Sbjct: 280 LATGDTATTSSRGGGCRGR 298
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 71 PSPACAAPHRTAPHHDTLSSPST 139
P+P APH PH SP+T
Sbjct: 68 PAPPAPAPHLVVPHGGWTVSPTT 90
>05_03_0605 - 16141361-16141398,16141585-16141885,16143980-16144492
Length = 283
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 196 FVRARCGVMRRGTVLCSGDEARAATRGGE 282
FVR RC V+R L + D+ R G+
Sbjct: 9 FVRLRCSVVRCSKYLAAEDDGRGVCLSGQ 37
>05_03_0103 + 8422250-8422813
Length = 187
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 152 HFASLSRAKTACRDAVRCGVARRRLGTAAR 63
H+ +SR R + RCG A R GTA R
Sbjct: 102 HYGGVSRRARDGRGSPRCGEAGGRGGTARR 131
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 234 SAAPHHTAPRPNKPTAKRISTLYR--*QSAFRI 142
S PH T +P +P +RIS Y+ QSA R+
Sbjct: 339 SKLPHATIFKPQQPYKRRISETYKDFPQSALRL 371
>02_01_0587 - 4341772-4342164
Length = 130
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 154 CISHHCRGRRQRVVMRCGAVWRGAGWGRPLAKSA 53
C+ C G R R + CG + A R LA++A
Sbjct: 83 CLEAACAGERWRALPACGHAFHAACVDRWLARAA 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,159
Number of Sequences: 37544
Number of extensions: 185403
Number of successful extensions: 910
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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