Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D20
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    29   1.2  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 240 QYSAAPHHTAPRPNKPTAKRIST 172
           QY+ AP H +P+P +PT  +  T
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQT 530


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 240 QYSAAPHHTAPRPNKPTAKRIST 172
           QY+ AP H +P+P +PT  +  T
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQT 530


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 203 LTNRPQNEYRHFIDNKVHFASLSR 132
           +T      YRHF+DN V F  LSR
Sbjct: 804 ITITETRNYRHFMDNLVEFTQLSR 827


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 62  SERPSPACAAPHRTAPHHDTLSSPSTVMRNAL 157
           S+  +PA   P R    +D  SSPS V+R  L
Sbjct: 12  SKSSAPATRRPSRPCSSYDRPSSPSVVIRERL 43


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 62   SERPSPACAAPHRTAPHHDTLSSPSTVMRNAL 157
            S+  +PA   P R    +D  SSPS V+R  L
Sbjct: 1391 SKSSAPATRRPSRPCSSYDRPSSPSVVIRERL 1422


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 56  RLSERPSPACAAPHRTAPHHDTLSSPSTVMRNA 154
           R S  PSP  ++  RT+P   T+SS S +  +A
Sbjct: 605 RSSRSPSPPASSSGRTSPAMSTISSMSRLKVSA 637


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 56  RLSERPSPACAAPHRTAPHHDTLSSPSTVMRNA 154
           R S  PSP  ++  RT+P   T+SS S +  +A
Sbjct: 605 RSSRSPSPPASSSGRTSPAMSTISSMSRLKVSA 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,087,260
Number of Sequences: 27780
Number of extensions: 132211
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)