Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D19
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   2.2  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   3.8  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   5.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    24   8.7  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 161 RCIWRKQTQCEIRAWRTERSC*NFRSK 241
           RCIWRK  +C   A+ +ER+   FRS+
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSE 188


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 108 ANEDEGKLELFSGVVIEKDASGENK 182
           +  D+G L+LF    +EK+  G+N+
Sbjct: 55  SENDDGTLDLFGDSELEKEQKGDNQ 79


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 272 TNSWLALVLRLLPWWPF 322
           T SW  ++   LP+WPF
Sbjct: 44  TASWYTVLWAFLPFWPF 60


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 171 QMHLSQ*QHQRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLVP 1
           ++ LS  +  ++ P S+     PL+Q  K  P  IP+ + A   N+    P+ TL P
Sbjct: 325 KLKLSGKELPKVLPSSMLSSVAPLMQKSKSVPTSIPSVVPA---NISSPNPNPTLAP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,930
Number of Sequences: 5004
Number of extensions: 24325
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)