Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D19
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0179 + 20952070-20955228                                         29   2.1  
04_03_0852 + 20289439-20289721,20289858-20290642                       29   2.1  
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           28   3.7  
11_06_0730 - 26728241-26729335,26729998-26730660                       27   4.9  
04_04_0351 + 24615858-24616448                                         27   8.6  

>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -3

Query: 387 CKERQLSNHQGFSHQ*CQTTEEKGHHGNNLNTNASQELVVYFSYSYPXSLLRKF 226
           C+     NH+  S++   +  + GH  N    ++         YSYP S    F
Sbjct: 784 CRPVSTENHESLSYEKNTSLPKNGHDANGFGNSSEPSCPSPSIYSYPDSEFHNF 837


>04_03_0852 + 20289439-20289721,20289858-20290642
          Length = 355

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 144 QRIAPVSLHLHSPPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLVP 1
           Q ++P S  L  P ++ P  + P   P     ++QN   S PDCT+ P
Sbjct: 26  QPLSPDSPILRDPNVI-PIYMTPGSSPTVASCYNQNNTASGPDCTVEP 72


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 132 PVSLHLHSPPLVQPCKLPPCIIPNTIHAFS 43
           PV      PP+ Q C   PC  P++   FS
Sbjct: 50  PVCFEPFKPPIFQACSYEPCFCPDSGCGFS 79


>11_06_0730 - 26728241-26729335,26729998-26730660
          Length = 585

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 275 WSYTSLILTXRACFESSSSFSQFARLE 195
           WSY  L++  R CF+  S F +   LE
Sbjct: 528 WSYNQLVVDVRRCFQYCSIFPRRYELE 554


>04_04_0351 + 24615858-24616448
          Length = 196

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 132 ELFSGVVIEKDAS--GENKLNVKFEPGELREAARTFEASSXG 251
           EL+  ++   D S  G  K   + E G++REA R F+A+  G
Sbjct: 97  ELYRSIMAGGDDSKDGRAKEEEEEEDGDMREAFRVFDANGDG 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,250,406
Number of Sequences: 37544
Number of extensions: 165934
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)