Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_D18
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U97010-5|AAK73903.1|  444|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U97010-4|AAL65798.1|  438|Caenorhabditis elegans Hypothetical pr...    28   4.8  
CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical
           protein W08A12.1a protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 617 ETQRGILRNNHKNYKLLRLHTHPHVNPLRRCFSYCARHFN 498
           ET+  +L  ++  Y  +R  +   +   RRCF Y   +FN
Sbjct: 383 ETRMNVLSRDYNTYANMRDKSRASIYKKRRCFMYGNMYFN 422


>U97010-5|AAK73903.1|  444|Caenorhabditis elegans Hypothetical
           protein W08A12.1b protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 617 ETQRGILRNNHKNYKLLRLHTHPHVNPLRRCFSYCARHFN 498
           ET+  +L  ++  Y  +R  +   +   RRCF Y   +FN
Sbjct: 326 ETRMNVLSRDYNTYANMRDKSRASIYKKRRCFMYGNMYFN 365


>U97010-4|AAL65798.1|  438|Caenorhabditis elegans Hypothetical
           protein W08A12.1c protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 617 ETQRGILRNNHKNYKLLRLHTHPHVNPLRRCFSYCARHFN 498
           ET+  +L  ++  Y  +R  +   +   RRCF Y   +FN
Sbjct: 320 ETRMNVLSRDYNTYANMRDKSRASIYKKRRCFMYGNMYFN 359


>CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical
           protein T06A10.3 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 566 RLHTHPHVNPLRRCFSYCARHF 501
           +LH +PH   L+RC SY  RHF
Sbjct: 45  KLHFYPHSLKLKRC-SYNMRHF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,014
Number of Sequences: 27780
Number of extensions: 225402
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)