Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_D16
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 119 2e-27
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 115 2e-26
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 42 5e-04
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 41 6e-04
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 41 8e-04
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 31 0.51
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.2
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 28 4.8
07_01_0741 - 5651773-5651880,5651987-5652055,5652233-5652280,565... 27 8.3
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 119 bits (286), Expect = 2e-27
Identities = 54/91 (59%), Positives = 69/91 (75%)
Frame = +1
Query: 67 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 246
MKLVRFLMKL++ETVTIELKNG+ VHGTITGVD++MNTHLK VK+TLK + + + LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSV 60
Query: 247 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 339
RGNNIRYY ++DTP+ + K+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKAKK 91
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 115 bits (277), Expect = 2e-26
Identities = 52/88 (59%), Positives = 68/88 (77%)
Frame = +1
Query: 76 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 255
+RFLMKL++ETVTIELKNG+VVHGTITGVD++MNTHLK VK+TLK + + L+ LS+RGN
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 225
Query: 256 NIRYYXXXXXXXXXXXXIDDTPKGRGKR 339
NIRYY ++DTP+ + K+
Sbjct: 226 NIRYYILPDSLNLETLLVEDTPRVKAKK 253
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +1
Query: 76 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 255
V+ L + + VT+ELK G V G++ + N L + T K+ + QLE + IRG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 256 NIRY 267
+R+
Sbjct: 69 RVRF 72
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 76 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 255
V+ L + + VT+ELK G V G + + N L + T K+ + QLE + IRG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 256 NIRY 267
+R+
Sbjct: 69 RVRF 72
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 115 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 267
+ELKNG +G + D MN HL+ V T K+ ++ ++ IRGN I+Y
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKY 68
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 67 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 201
M + +L + VT+ELKN + GT+ VD +N L+ +V
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRV 45
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 376 GHRDYRRLEGSPPAYPFLLVYRRLIMFL 293
G R RR EG+ A+P L RRLI+ L
Sbjct: 175 GRRRIRRWEGAAAAFPLALARRRLILLL 202
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 131 PFFNSIVTVSWLSFIKNLTSFILLAYRLIFI 39
P+F++I ++ WLSF N+ S + A+ L +
Sbjct: 838 PWFHNISSMEWLSFRLNMLSNFVFAFSLTLL 868
>07_01_0741 -
5651773-5651880,5651987-5652055,5652233-5652280,
5652487-5652657,5652746-5652899,5653720-5653797,
5654165-5654208,5654505-5654604,5655621-5655775
Length = 308
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 61 NKMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMN-THLKAVKVTLKNR 216
N +K+ ++ V E+KNG+ G+ +D+ + H K K+T + R
Sbjct: 134 NDLKVAAEVVMPLINNVMAEIKNGTYPQGSFLNIDIPTDAAHHKGYKITKQGR 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,689
Number of Sequences: 37544
Number of extensions: 208665
Number of successful extensions: 559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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